FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038420 through 18771 annotations produced 1 hits

(CG10311):

Annotation Number : CG10311
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038420
Gbrowse : chr3R:12176626-12182733 (-) // 100.0 //
Probeset : 1640170_at
Accessions : protein= NP_650536;, nucleotide= NM_142279;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038420.
BioGrid reports that CG10311 interacts with CG12746 CG31643 .
VDRC has 2 RNAi stocks for FBgn0038420 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	259 ± 10	4 of 4	1.10	Up
Head	708 ± 38	4 of 4	3.10	Up
Eye	1288 ± 115	4 of 4	5.67	Up
Thoracicoabdominal ganglion	416 ± 14	4 of 4	1.80	Up
Salivary gland	431 ± 19	4 of 4	1.90	Up
Crop	1041 ± 21	4 of 4	4.60	Up
Midgut	171 ± 3	4 of 4	0.80	Down
Tubule	207 ± 14	4 of 4	0.90	None
Hindgut	617 ± 9	4 of 4	2.70	Up
Heart	1174 ± 45	4 of 4	5.17	Up
Fat body	274 ± 35	4 of 4	1.21	None
Ovary	15 ± 1	4 of 4	0.10	Down
Testis	62 ± 3	4 of 4	0.30	Down
Male accessory glands	286 ± 4	4 of 4	1.30	Up
Virgin spermatheca	372 ± 10	4 of 4	1.64	Up
Mated spermatheca	610 ± 48	4 of 4	2.69	Up
Adult carcass	671 ± 21	4 of 4	3.00	Up
Larval CNS	58 ± 7	4 of 4	0.26	Down
Larval Salivary gland	555 ± 7	4 of 4	2.45	Up
Larval midgut	128 ± 1	4 of 4	0.57	Down
Larval tubule	190 ± 11	4 of 4	0.80	None
Larval hindgut	409 ± 17	4 of 4	1.80	Up
Larval fat body	1338 ± 147	4 of 4	5.90	Up
Larval trachea	355 ± 38	4 of 4	1.56	Up
Larval carcass	631 ± 36	4 of 4	2.78	Up
S2 cells (growing)	224 ± 13	4 of 4	0.99	None
Whole fly	227 ± 9	4 of 4

Looking for FBgn0038420. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720