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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038422 through 18771 annotations produced 1 hits



(CG14880):

Annotation Number : CG14880
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038422
Gbrowse : chr3R:12186050-12194026 (-) // 100.0 //
Probeset : 1638023_s_at
Accessions : protein= NP_650538; /// NP_732134;, nucleotide= NM_142281; /// NM_169716;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0038422.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 10 of 4 0.10None
Head73 ± 34 of 4 6.00Up
Eye4 ± 10 of 4 0.38None
Thoracicoabdominal ganglion7 ± 10 of 4 0.60None
Salivary gland398 ± 424 of 432.76Up
Crop42 ± 24 of 4 3.50Up
Midgut4 ± 10 of 4 0.40None
Tubule1 ± 00 of 4 0.10Down
Hindgut13 ± 20 of 4 1.10None
Heart3 ± 00 of 4 0.27None
Fat body6 ± 40 of 4 0.57None
Ovary2 ± 00 of 4 0.20None
Testis22 ± 14 of 4 1.90None
Male accessory glands6 ± 30 of 4 0.50None
Virgin spermatheca2 ± 10 of 4 0.23None
Mated spermatheca2 ± 10 of 4 0.17None
Adult carcass68 ± 84 of 4 5.60Up
Larval CNS3 ± 10 of 4 0.29None
Larval Salivary gland21 ± 20 of 4 1.72None
Larval midgut1 ± 00 of 4 0.14None
Larval tubule1 ± 00 of 4 0.10None
Larval hindgut9 ± 00 of 4 0.80None
Larval fat body3 ± 10 of 4 0.30None
Larval trachea5 ± 30 of 4 0.46None
Larval carcass12 ± 10 of 4 1.05None
S2 cells (growing)2 ± 00 of 4 0.17None
Whole fly12 ± 32 of 4

Looking for FBgn0038422. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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