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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038426 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein S33 (mRpS33):

Annotation Number : CG10406
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038426
Gbrowse : chr3R:12261759-12262315 (-) // 100.0 //
Probeset : 1633083_at
Accessions : protein= NP_524380;, nucleotide= NM_079656;
Pathway : 0005763 // mitochondrial small ribosomal subunit // inferred from sequence or structural similarity /// 0005840 // ribos
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity
FlyMine data for FBgn0038426.
BioGrid reports that CG10406 interacts with CG9986 .
VDRC has 4 RNAi stocks for FBgn0038426 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain381 84 of 4 1.70Up
Head231 94 of 4 1.00None
Eye217 184 of 4 0.99None
Thoracicoabdominal ganglion450 174 of 4 2.00Up
Salivary gland245 54 of 4 1.11None
Crop181 114 of 4 0.80None
Midgut152 44 of 4 0.70Down
Tubule126 64 of 4 0.60Down
Hindgut223 74 of 4 1.00None
Heart166 134 of 4 0.76Down
Fat body184 134 of 4 0.84None
Ovary242 24 of 4 1.10None
Testis265 14 of 4 1.20None
Male accessory glands126 24 of 4 0.60Down
Virgin spermatheca160 94 of 4 0.73Down
Mated spermatheca152 124 of 4 0.69Down
Adult carcass192 74 of 4 0.90None
Larval CNS246 24 of 4 1.12None
Larval Salivary gland156 84 of 4 0.71Down
Larval midgut111 114 of 4 0.51Down
Larval tubule96 74 of 4 0.40Down
Larval hindgut223 234 of 4 1.01None
Larval fat body99 114 of 4 0.50Down
Larval trachea120 194 of 4 0.55Down
Larval carcass113 224 of 4 0.51Down
S2 cells (growing)154 14 of 4 0.70Down
Whole fly220 154 of 4

Looking for FBgn0038426. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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