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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038427 through 18771 annotations produced 1 hits



endosomal maturation defective (ema):

Annotation Number : CG12753
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038427
Gbrowse : chr3R:12262601-12267382 (-) // 100.0 //
Probeset : 1634737_at
Accessions : protein= NP_001034058; /// NP_650542;, nucleotide= NM_001038969; /// NM_142285;
Pathway : 0005770 // late endosome // inferred from direct assay /// 0016021 // integral to membrane // inferred from direct assay
FlyMine data for FBgn0038427.
BDGP gene expression has embryonic in situ data for CG12753: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0038427 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain184 ± 144 of 4 4.40Up
Head56 ± 54 of 4 1.40None
Eye69 ± 54 of 4 1.66Up
Thoracicoabdominal ganglion132 ± 54 of 4 3.20Up
Salivary gland48 ± 33 of 4 1.16None
Crop40 ± 14 of 4 1.00None
Midgut29 ± 20 of 4 0.70None
Tubule70 ± 54 of 4 1.70Up
Hindgut59 ± 44 of 4 1.40None
Heart43 ± 24 of 4 1.04None
Fat body39 ± 54 of 4 0.96None
Ovary73 ± 14 of 4 1.80Up
Testis36 ± 14 of 4 0.90None
Male accessory glands27 ± 43 of 4 0.70None
Virgin spermatheca28 ± 34 of 4 0.69None
Mated spermatheca32 ± 44 of 4 0.77None
Adult carcass72 ± 34 of 4 1.70Up
Larval CNS61 ± 84 of 4 1.47None
Larval Salivary gland46 ± 04 of 4 1.12None
Larval midgut40 ± 43 of 4 0.98None
Larval tubule38 ± 24 of 4 0.90None
Larval hindgut42 ± 24 of 4 1.02None
Larval fat body18 ± 52 of 4 0.40Down
Larval trachea33 ± 34 of 4 0.81None
Larval carcass32 ± 24 of 4 0.78None
S2 cells (growing)64 ± 14 of 4 1.54None
Whole fly41 ± 74 of 4

Looking for FBgn0038427. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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