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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038429 through 18771 annotations produced 1 hits



(CG14882):

Annotation Number : CG14882
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038429
Gbrowse : chr3R:12268975-12270534 (+) // 100.0 //
Probeset : 1640894_at
Accessions : protein= NP_650544;, nucleotide= NM_142287;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from
FlyMine data for FBgn0038429.
Homophila reports that CG14882 is a close match (3e-13) to human gene IHPS1;NOS1 (NP_000611), a gene associated with {Pyloric stenosis, infantile hypertrophic, 1, susceptibility to}, 179010 (3).
BioGrid reports that CG14882 interacts with CG7334 .
VDRC has 3 RNAi stocks for FBgn0038429 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 ± 14 of 4 0.70Down
Head26 ± 24 of 4 0.40Down
Eye29 ± 14 of 4 0.46Down
Thoracicoabdominal ganglion32 ± 24 of 4 0.50Down
Salivary gland17 ± 30 of 4 0.27Down
Crop24 ± 24 of 4 0.40Down
Midgut18 ± 23 of 4 0.30Down
Tubule20 ± 14 of 4 0.30Down
Hindgut16 ± 23 of 4 0.30Down
Heart21 ± 14 of 4 0.34Down
Fat body35 ± 64 of 4 0.56Down
Ovary173 ± 44 of 4 2.70Up
Testis33 ± 14 of 4 0.50Down
Male accessory glands23 ± 52 of 4 0.40Down
Virgin spermatheca21 ± 14 of 4 0.33Down
Mated spermatheca27 ± 14 of 4 0.43Down
Adult carcass24 ± 24 of 4 0.40Down
Larval CNS57 ± 34 of 4 0.89None
Larval Salivary gland32 ± 04 of 4 0.51Down
Larval midgut12 ± 21 of 4 0.19Down
Larval tubule17 ± 04 of 4 0.30Down
Larval hindgut17 ± 24 of 4 0.26Down
Larval fat body46 ± 44 of 4 0.70Down
Larval trachea36 ± 134 of 4 0.57Down
Larval carcass21 ± 04 of 4 0.33Down
S2 cells (growing)72 ± 24 of 4 1.13Up
Whole fly64 ± 24 of 4

Looking for FBgn0038429. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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