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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038435 through 18771 annotations produced 1 hits



Guanylyl cyclase at 89Da (Gyc-89Da):

Annotation Number : CG14885
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038435
Gbrowse : chr3R:12299091-12301095 (+) // 100.0 //
Probeset : 1628585_at
Accessions : protein= NP_001036718; /// NP_001036719;, nucleotide= NM_001043253; /// NM_001043254;
Pathway : "0005737 // cytoplasm // inferred from electronic annotation /// 0008074 // guanylate cyclase complex
Interpro : soluble // inferred from sequence or structural similarity /// 0008074 // guanylate cyclase complex
FlyMine data for FBgn0038435.
Homophila reports that CG14885 is a close match (2e-36) to human gene CORD6;GUC2D;GUCY2D;LCA1 (NP_000171), a gene associated with Cone-rod dystrophy 6, 601777(3);Leber congenital amaurosis I, 204000 (3).
BioGrid reports that CG14885 interacts with CG15529 .
TRiP has 1 RNAi stocks for FBgn0038435 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038435 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 14 of 4 5.60Up
Head5 02 of 4 1.90None
Eye0 00 of 4 0.26None
Thoracicoabdominal ganglion17 14 of 4 5.40Up
Salivary gland3 20 of 4 1.17None
Crop4 01 of 4 1.50None
Midgut0 00 of 4 0.10None
Tubule1 00 of 4 0.50Down
Hindgut3 11 of 4 0.90None
Heart2 10 of 4 0.75None
Fat body3 10 of 4 1.14None
Ovary1 00 of 4 0.50None
Testis1 00 of 4 0.40None
Male accessory glands2 10 of 4 0.80None
Virgin spermatheca1 10 of 4 0.59None
Mated spermatheca2 00 of 4 0.89None
Adult carcass0 00 of 4 0.30None
Larval CNS20 34 of 4 6.66Up
Larval Salivary gland5 10 of 4 1.79None
Larval midgut3 10 of 4 1.13None
Larval tubule1 00 of 4 0.50None
Larval hindgut1 00 of 4 0.58None
Larval fat body0 00 of 4 0.30None
Larval trachea3 10 of 4 1.02None
Larval carcass1 00 of 4 0.37None
S2 cells (growing)0 00 of 4 0.12None
Whole fly3 10 of 4

Looking for FBgn0038435. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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