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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038440 through 18771 annotations produced 1 hits



Gr89a (Gr89a):

Annotation Number : CG14901
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038440
Gbrowse : chr3R:12323760-12324525 (-) // 100.0 //
Probeset : 1626737_at
Accessions : protein= NP_650555;, nucleotide= NM_142298;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0038440.
VDRC has 1 RNAi stocks for FBgn0038440 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 1.10None
Head2 ± 00 of 4 0.70None
Eye1 ± 10 of 4 0.54None
Thoracicoabdominal ganglion5 ± 22 of 4 1.60None
Salivary gland12 ± 40 of 4 3.52None
Crop3 ± 00 of 4 0.80None
Midgut19 ± 24 of 4 5.50Up
Tubule10 ± 12 of 4 3.00Up
Hindgut3 ± 10 of 4 1.00None
Heart2 ± 00 of 4 0.65None
Fat body5 ± 10 of 4 1.63None
Ovary2 ± 11 of 4 0.80None
Testis6 ± 12 of 4 1.70None
Male accessory glands13 ± 23 of 4 3.80Up
Virgin spermatheca5 ± 10 of 4 1.47None
Mated spermatheca7 ± 22 of 4 2.16None
Adult carcass6 ± 10 of 4 1.90None
Larval CNS3 ± 00 of 4 0.99None
Larval Salivary gland8 ± 20 of 4 2.25None
Larval midgut16 ± 12 of 4 4.61Up
Larval tubule8 ± 13 of 4 2.40Up
Larval hindgut6 ± 00 of 4 1.65None
Larval fat body5 ± 10 of 4 1.40None
Larval trachea3 ± 21 of 4 0.90None
Larval carcass2 ± 10 of 4 0.72None
S2 cells (growing)3 ± 10 of 4 1.10None
Whole fly3 ± 01 of 4

Looking for FBgn0038440. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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