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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038445 through 18771 annotations produced 1 hits



(CG14891):

Annotation Number : CG14891
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038445
Gbrowse : chr3R:12397237-12398885 (+) // 100.0 //
Probeset : 1637745_a_at
Accessions : protein= NP_650560; /// NP_732155;, nucleotide= NM_142303; /// NM_169723;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0038445.
BDGP gene expression has embryonic in situ data for CG14891: 2 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0038445 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038445 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head4 ± 11 of 4 0.00Down
Eye2 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland11 ± 50 of 4 0.12Down
Crop5 ± 10 of 4 0.10Down
Midgut4 ± 10 of 4 0.10Down
Tubule4 ± 00 of 4 0.10Down
Hindgut4 ± 10 of 4 0.00Down
Heart1 ± 00 of 4 0.02Down
Fat body3 ± 21 of 4 0.04Down
Ovary1 ± 00 of 4 0.00Down
Testis1203 ± 94 of 412.50Up
Male accessory glands11 ± 41 of 4 0.10Down
Virgin spermatheca3 ± 00 of 4 0.04Down
Mated spermatheca4 ± 10 of 4 0.05Down
Adult carcass13 ± 32 of 4 0.10Down
Larval CNS3 ± 20 of 4 0.04Down
Larval Salivary gland3 ± 11 of 4 0.04Down
Larval midgut4 ± 20 of 4 0.05Down
Larval tubule7 ± 10 of 4 0.10Down
Larval hindgut2 ± 01 of 4 0.03Down
Larval fat body160 ± 784 of 4 1.70None
Larval trachea7 ± 71 of 4 0.08Down
Larval carcass4 ± 00 of 4 0.05Down
S2 cells (growing)3 ± 00 of 4 0.04Down
Whole fly96 ± 144 of 4

Looking for FBgn0038445. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime