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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038448 through 18771 annotations produced 1 hits



(CG12783):

Annotation Number : CG12783
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038448
Gbrowse : chr3R:12437350-12439122 (-) // 100.0 //
Probeset : 1628437_at
Accessions : protein= NP_650564;, nucleotide= NM_142307;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0038448.
TRiP has 1 RNAi stocks for FBgn0038448 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038448 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.08Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland9 ± 40 of 4 0.52None
Crop2 ± 10 of 4 0.20Down
Midgut4 ± 10 of 4 0.30Down
Tubule4 ± 10 of 4 0.20Down
Hindgut2 ± 10 of 4 0.20Down
Heart0 ± 00 of 4 0.02Down
Fat body1 ± 00 of 4 0.06Down
Ovary1 ± 00 of 4 0.10Down
Testis210 ± 104 of 411.90Up
Male accessory glands3 ± 10 of 4 0.20Down
Virgin spermatheca0 ± 00 of 4 0.04Down
Mated spermatheca0 ± 00 of 4 0.04Down
Adult carcass2 ± 10 of 4 0.20Down
Larval CNS2 ± 10 of 4 0.17Down
Larval Salivary gland3 ± 10 of 4 0.19Down
Larval midgut3 ± 00 of 4 0.20Down
Larval tubule4 ± 10 of 4 0.30Down
Larval hindgut2 ± 10 of 4 0.15Down
Larval fat body23 ± 111 of 4 1.30None
Larval trachea1 ± 10 of 4 0.06Down
Larval carcass3 ± 00 of 4 0.18Down
S2 cells (growing)1 ± 00 of 4 0.11Down
Whole fly17 ± 14 of 4

Looking for FBgn0038448. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime