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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038451 through 18771 annotations produced 1 hits



(CG14893):

Annotation Number : CG14893
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038451
Gbrowse : chr3R:12446550-12448325 (+) // 100.0 //
Probeset : 1629617_at
Accessions : protein= NP_650568;, nucleotide= NM_142311;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0038451.
VDRC has 3 RNAi stocks for FBgn0038451 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.30Down
Head1 10 of 4 0.30Down
Eye2 10 of 4 0.47None
Thoracicoabdominal ganglion2 00 of 4 0.30Down
Salivary gland5 10 of 4 0.91None
Crop3 10 of 4 0.60None
Midgut3 10 of 4 0.60None
Tubule2 00 of 4 0.40Down
Hindgut1 00 of 4 0.20Down
Heart27 84 of 4 4.42None
Fat body21 84 of 4 3.47Up
Ovary0 00 of 4 0.10Down
Testis1 00 of 4 0.30Down
Male accessory glands536 524 of 486.60Up
Virgin spermatheca1 00 of 4 0.21Down
Mated spermatheca0 00 of 4 0.12Down
Adult carcass20 41 of 4 3.20None
Larval CNS1 10 of 4 0.29Down
Larval Salivary gland1 00 of 4 0.30Down
Larval midgut4 10 of 4 0.75None
Larval tubule1 00 of 4 0.30Down
Larval hindgut2 10 of 4 0.43None
Larval fat body4 10 of 4 0.60None
Larval trachea2 21 of 4 0.40Down
Larval carcass77 204 of 412.54Up
S2 cells (growing)1 00 of 4 0.29Down
Whole fly6 13 of 4

Looking for FBgn0038451. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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