FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038455 through 18771 annotations produced 2 hits

open reading frame 2 /// (CG14906 /// CG14907):

Annotation Number : CG14907
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015351 /// FBgn0038455
Gbrowse : chr3R:12477276-12477999 (-) // 100.0 //
Probeset : 1623569_at
Accessions : protein= NP_001097815; /// NP_001097816; /// NP_650573; /// NP_650574;, nucleotide= NM_001104345; /// NM_001104346; /// NM_142316; /// NM_142317;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0016481 // negative regulation
FlyMine data for FBgn0015351 /// FBgn0038455.
BioGrid reports that CG14907 interacts with CG15459 CG15811 CG2028 CG4337 CG9986 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	12 ± 0	4 of 4	0.30	Down
Head	30 ± 2	4 of 4	0.60	Down
Eye	31 ± 2	4 of 4	0.65	Down
Thoracicoabdominal ganglion	27 ± 1	4 of 4	0.60	Down
Salivary gland	110 ± 5	4 of 4	2.29	Up
Crop	45 ± 5	4 of 4	1.00	None
Midgut	249 ± 8	4 of 4	5.20	Up
Tubule	65 ± 3	4 of 4	1.30	Up
Hindgut	72 ± 4	4 of 4	1.50	Up
Heart	47 ± 1	4 of 4	0.99	None
Fat body	42 ± 5	4 of 4	0.87	None
Ovary	38 ± 2	4 of 4	0.80	None
Testis	17 ± 1	4 of 4	0.40	Down
Male accessory glands	105 ± 5	4 of 4	2.20	Up
Virgin spermatheca	36 ± 4	4 of 4	0.75	None
Mated spermatheca	34 ± 2	4 of 4	0.71	Down
Adult carcass	40 ± 2	4 of 4	0.80	None
Larval CNS	23 ± 3	4 of 4	0.49	Down
Larval Salivary gland	100 ± 2	4 of 4	2.09	Up
Larval midgut	152 ± 8	4 of 4	3.15	Up
Larval tubule	95 ± 4	4 of 4	2.00	Up
Larval hindgut	75 ± 5	4 of 4	1.57	Up
Larval fat body	30 ± 5	4 of 4	0.60	Down
Larval trachea	48 ± 5	4 of 4	1.01	None
Larval carcass	67 ± 2	4 of 4	1.40	Up
S2 cells (growing)	503 ± 12	4 of 4	10.44	Up
Whole fly	48 ± 3	4 of 4

open reading frame 2 /// (CG14906 /// CG14907):

Annotation Number : CG14906
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015351 /// FBgn0038455
Gbrowse : chr3R:12475767-12476847 (-) // 100.0 //
Probeset : 1627183_at
Accessions : protein= NP_001097815; /// NP_001097816; /// NP_650573; /// NP_650574;, nucleotide= NM_001104345; /// NM_001104346; /// NM_142316; /// NM_142317;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0016481 // negative regulation
FlyMine data for FBgn0015351 /// FBgn0038455.
BioGrid reports that CG14906 interacts with CG6866 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	35 ± 1	4 of 4	0.90	None
Head	18 ± 4	0 of 4	0.50	Down
Eye	20 ± 1	2 of 4	0.49	Down
Thoracicoabdominal ganglion	41 ± 3	4 of 4	1.00	None
Salivary gland	30 ± 4	0 of 4	0.74	None
Crop	30 ± 4	1 of 4	0.80	None
Midgut	46 ± 4	4 of 4	1.10	None
Tubule	43 ± 1	3 of 4	1.10	None
Hindgut	23 ± 1	0 of 4	0.60	Down
Heart	22 ± 2	0 of 4	0.56	Down
Fat body	13 ± 8	0 of 4	0.32	Down
Ovary	61 ± 3	4 of 4	1.50	Up
Testis	19 ± 2	0 of 4	0.50	Down
Male accessory glands	33 ± 5	0 of 4	0.80	None
Virgin spermatheca	12 ± 5	0 of 4	0.30	Down
Mated spermatheca	13 ± 4	0 of 4	0.33	Down
Adult carcass	19 ± 6	0 of 4	0.50	Down
Larval CNS	56 ± 5	4 of 4	1.40	Up
Larval Salivary gland	31 ± 1	0 of 4	0.78	Down
Larval midgut	15 ± 4	0 of 4	0.38	Down
Larval tubule	19 ± 5	0 of 4	0.50	Down
Larval hindgut	16 ± 1	0 of 4	0.40	Down
Larval fat body	6 ± 1	0 of 4	0.20	Down
Larval trachea	50 ± 9	1 of 4	1.25	None
Larval carcass	19 ± 3	0 of 4	0.47	Down
S2 cells (growing)	109 ± 5	4 of 4	2.71	Up
Whole fly	40 ± 2	4 of 4

Looking for FBgn0038455. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720