FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038461 through 18771 annotations produced 1 hits

/// (CG17556 /// CG3678):

Annotation Number : CG17556
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038461 /// FBgn0038462
Gbrowse : chr3R:12820257-12821810 (-) // 100.0 // /// chr3R:12816049-12817619 (-) // 96.97 //
Probeset : 1626787_s_at
Accessions : protein= NP_650580; /// NP_650581;, nucleotide= NM_142323; /// NM_142324;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0038461 /// FBgn0038462.
BioGrid reports that CG17556 interacts with CG32772 CG3501 CG9399 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	441 ± 6	4 of 4	0.90	Down
Head	409 ± 5	4 of 4	0.90	Down
Eye	631 ± 11	4 of 4	1.34	Up
Thoracicoabdominal ganglion	457 ± 7	4 of 4	1.00	None
Salivary gland	500 ± 27	4 of 4	1.06	None
Crop	519 ± 13	4 of 4	1.10	Up
Midgut	412 ± 9	4 of 4	0.90	Down
Tubule	588 ± 35	4 of 4	1.20	Up
Hindgut	368 ± 8	4 of 4	0.80	Down
Heart	1127 ± 59	4 of 4	2.39	Up
Fat body	799 ± 112	4 of 4	1.69	Up
Ovary	652 ± 9	4 of 4	1.40	Up
Testis	373 ± 5	4 of 4	0.80	Down
Male accessory glands	589 ± 9	4 of 4	1.20	Up
Virgin spermatheca	416 ± 5	4 of 4	0.88	Down
Mated spermatheca	412 ± 19	4 of 4	0.87	Down
Adult carcass	630 ± 20	4 of 4	1.30	Up
Larval CNS	475 ± 15	4 of 4	1.01	None
Larval Salivary gland	668 ± 24	4 of 4	1.42	Up
Larval midgut	293 ± 8	4 of 4	0.62	Down
Larval tubule	652 ± 5	4 of 4	1.40	Up
Larval hindgut	386 ± 12	4 of 4	0.82	Down
Larval fat body	647 ± 53	4 of 4	1.40	Up
Larval trachea	486 ± 53	4 of 4	1.03	None
Larval carcass	503 ± 10	4 of 4	1.07	None
S2 cells (growing)	939 ± 8	4 of 4	1.99	Up
Whole fly	472 ± 9	4 of 4

Looking for FBgn0038461. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720