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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038462 through 18771 annotations produced 2 hits



(CG17556):

Annotation Number : CG17556
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038462
Gbrowse : chr3R:12820257-12821810 (-) // 100.0 // /// chr3R:12816049-12817619 (-) // 96.97 //
Probeset : 1623943_at
Accessions : protein= NP_650581;, nucleotide= NM_142324;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0038462.
BioGrid reports that CG17556 interacts with CG32772 CG3501 CG9399 .
VDRC has 2 RNAi stocks for FBgn0038462 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain348 174 of 4 1.00None
Head280 304 of 4 0.80None
Eye220 64 of 4 0.65None
Thoracicoabdominal ganglion483 194 of 4 1.40Up
Salivary gland201 44 of 4 0.59Down
Crop532 514 of 4 1.60Up
Midgut286 234 of 4 0.80None
Tubule580 134 of 4 1.70Up
Hindgut305 74 of 4 0.90None
Heart690 1454 of 4 2.04None
Fat body930 1314 of 4 2.74Up
Ovary618 114 of 4 1.80Up
Testis256 44 of 4 0.80None
Male accessory glands347 254 of 4 1.00None
Virgin spermatheca1187 644 of 4 3.50Up
Mated spermatheca1180 854 of 4 3.48Up
Adult carcass489 214 of 4 1.40Up
Larval CNS443 294 of 4 1.31None
Larval Salivary gland340 154 of 4 1.00None
Larval midgut269 134 of 4 0.80None
Larval tubule514 124 of 4 1.50Up
Larval hindgut297 44 of 4 0.88None
Larval fat body348 374 of 4 1.00None
Larval trachea198 234 of 4 0.59Down
Larval carcass344 314 of 4 1.02None
S2 cells (growing)467 84 of 4 1.38Up
Whole fly339 394 of 4



/// (CG17556 /// CG3678):

Annotation Number : CG17556
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038461 /// FBgn0038462
Gbrowse : chr3R:12820257-12821810 (-) // 100.0 // /// chr3R:12816049-12817619 (-) // 96.97 //
Probeset : 1626787_s_at
Accessions : protein= NP_650580; /// NP_650581;, nucleotide= NM_142323; /// NM_142324;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0038461 /// FBgn0038462.
BioGrid reports that CG17556 interacts with CG32772 CG3501 CG9399 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain441 64 of 4 0.90Down
Head409 54 of 4 0.90Down
Eye631 114 of 4 1.34Up
Thoracicoabdominal ganglion457 74 of 4 1.00None
Salivary gland500 274 of 4 1.06None
Crop519 134 of 4 1.10Up
Midgut412 94 of 4 0.90Down
Tubule588 354 of 4 1.20Up
Hindgut368 84 of 4 0.80Down
Heart1127 594 of 4 2.39Up
Fat body799 1124 of 4 1.69Up
Ovary652 94 of 4 1.40Up
Testis373 54 of 4 0.80Down
Male accessory glands589 94 of 4 1.20Up
Virgin spermatheca416 54 of 4 0.88Down
Mated spermatheca412 194 of 4 0.87Down
Adult carcass630 204 of 4 1.30Up
Larval CNS475 154 of 4 1.01None
Larval Salivary gland668 244 of 4 1.42Up
Larval midgut293 84 of 4 0.62Down
Larval tubule652 54 of 4 1.40Up
Larval hindgut386 124 of 4 0.82Down
Larval fat body647 534 of 4 1.40Up
Larval trachea486 534 of 4 1.03None
Larval carcass503 104 of 4 1.07None
S2 cells (growing)939 84 of 4 1.99Up
Whole fly472 94 of 4

Looking for FBgn0038462. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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