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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038466 through 18771 annotations produced 1 hits


Annotation Number : CG8907
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038466
Gbrowse : chr3R:12833995-12838273 (+) // 100.0 //
Probeset : 1626881_at
Accessions : protein= NP_650585;, nucleotide= NM_142328;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038466.
BDGP gene expression has embryonic in situ data for CG8907: 11 pix of staining in 4 body parts.
BioGrid reports that CG8907 interacts with CG9097 CG9665 .
TRiP has 1 RNAi stocks for FBgn0038466 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038466 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 04 of 4 0.10Down
Head15 33 of 4 0.10Down
Eye8 10 of 4 0.06Down
Thoracicoabdominal ganglion11 13 of 4 0.10Down
Salivary gland14 30 of 4 0.10Down
Crop13 13 of 4 0.10Down
Midgut1916 554 of 413.30Up
Tubule90 54 of 4 0.60Down
Hindgut309 74 of 4 2.10Up
Heart14 24 of 4 0.10Down
Fat body36 74 of 4 0.25Down
Ovary5 02 of 4 0.00Down
Testis4 00 of 4 0.00Down
Male accessory glands65 54 of 4 0.50Down
Virgin spermatheca83 184 of 4 0.58Down
Mated spermatheca47 54 of 4 0.33Down
Adult carcass14 11 of 4 0.10Down
Larval CNS12 34 of 4 0.08Down
Larval Salivary gland8 12 of 4 0.06Down
Larval midgut1756 1534 of 412.20Up
Larval tubule66 44 of 4 0.50Down
Larval hindgut316 344 of 4 2.20Up
Larval fat body28 24 of 4 0.20Down
Larval trachea7 31 of 4 0.05Down
Larval carcass8 21 of 4 0.06Down
S2 cells (growing)14 04 of 4 0.10Down
Whole fly144 144 of 4

Looking for FBgn0038466. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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