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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038469 through 18771 annotations produced 1 hits



(CG4009):

Annotation Number : CG4009
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038469
Gbrowse : chr3R:12859682-12861740 (-) // 100.0 //
Probeset : 1637707_at
Accessions : protein= NP_650588;, nucleotide= NM_142331;
Pathway : 0042600 // chorion // inferred from direct assay
Interpro : 0004601 // peroxidase activity // inferred from sequence or structural similarity /// 0004601 // peroxidase activity //
FlyMine data for FBgn0038469.
Homophila reports that CG4009 is a close match (4e-20) to human gene TPO;TPX (NP_783653), a gene associated with Goiter, congenital (3);Hyperthyroidism, congenital (3);Thyroid hormone organification defect IIA, 274500 (3);Total iodide organification defect, 274500 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye0 00 of 4 0.00Down
Thoracicoabdominal ganglion3 20 of 4 0.00Down
Salivary gland2 00 of 4 0.01Down
Crop1 00 of 4 0.00Down
Midgut5 20 of 4 0.00Down
Tubule3 10 of 4 0.00Down
Hindgut3 10 of 4 0.00Down
Heart0 00 of 4 0.00Down
Fat body6 10 of 4 0.03Down
Ovary520 534 of 4 2.10Up
Testis2 10 of 4 0.00Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca4 10 of 4 0.02Down
Mated spermatheca2 10 of 4 0.01Down
Adult carcass17 111 of 4 0.10Down
Larval CNS1 00 of 4 0.00Down
Larval Salivary gland1 00 of 4 0.01Down
Larval midgut5 10 of 4 0.02Down
Larval tubule1 10 of 4 0.00Down
Larval hindgut1 00 of 4 0.01Down
Larval fat body1 00 of 4 0.00Down
Larval trachea1 10 of 4 0.01Down
Larval carcass1 00 of 4 0.01Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly247 634 of 4

Looking for FBgn0038469. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime