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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038470 through 18771 annotations produced 1 hits



(CG18213):

Annotation Number : CG18213
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038470
Gbrowse : chr3R:12862115-12865924 (-) // 100.0 //
Probeset : 1633833_at
Accessions : protein= NP_650589;, nucleotide= NM_142332;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0038470.
BDGP gene expression has embryonic in situ data for CG18213: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0038470 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038470 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 ± 04 of 4 0.30Down
Head10 ± 14 of 4 0.10Down
Eye8 ± 13 of 4 0.08Down
Thoracicoabdominal ganglion52 ± 44 of 4 0.50Down
Salivary gland16 ± 23 of 4 0.16Down
Crop10 ± 13 of 4 0.10Down
Midgut12 ± 14 of 4 0.10Down
Tubule9 ± 02 of 4 0.10Down
Hindgut13 ± 04 of 4 0.10Down
Heart9 ± 13 of 4 0.09Down
Fat body36 ± 64 of 4 0.38Down
Ovary288 ± 44 of 4 3.00Up
Testis69 ± 34 of 4 0.70Down
Male accessory glands22 ± 34 of 4 0.20Down
Virgin spermatheca12 ± 14 of 4 0.13Down
Mated spermatheca20 ± 24 of 4 0.21Down
Adult carcass13 ± 12 of 4 0.10Down
Larval CNS156 ± 114 of 4 1.60Up
Larval Salivary gland153 ± 54 of 4 1.57Up
Larval midgut15 ± 14 of 4 0.16Down
Larval tubule18 ± 14 of 4 0.20Down
Larval hindgut20 ± 14 of 4 0.21Down
Larval fat body22 ± 44 of 4 0.20Down
Larval trachea48 ± 114 of 4 0.49Down
Larval carcass23 ± 24 of 4 0.24Down
S2 cells (growing)103 ± 14 of 4 1.06None
Whole fly97 ± 64 of 4

Looking for FBgn0038470. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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