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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038471 through 18771 annotations produced 1 hits


Annotation Number : CG5220
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038471
Gbrowse : chr3R:12866405-12867688 (+) // 100.0 //
Probeset : 1626096_at
Accessions : protein= NP_650590;, nucleotide= NM_142333;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0038471.
BDGP gene expression has embryonic in situ data for CG5220: 23 pix of staining in 9 body parts.
Homophila reports that CG5220 is a close match (3e-70) to human gene FTSJ1;JM23;MRX44;MRX9;SPB1 (NP_036412), a gene associated with Mental retardation, X-linked-9, 309549 (3).
BioGrid reports that CG5220 interacts with CG9014 .
VDRC has 2 RNAi stocks for FBgn0038471 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain188 34 of 4 0.70Down
Head164 74 of 4 0.60Down
Eye229 104 of 4 0.87None
Thoracicoabdominal ganglion291 54 of 4 1.10None
Salivary gland258 104 of 4 0.98None
Crop152 74 of 4 0.60Down
Midgut211 24 of 4 0.80Down
Tubule116 114 of 4 0.40Down
Hindgut121 74 of 4 0.50Down
Heart173 44 of 4 0.66Down
Fat body197 254 of 4 0.75Down
Ovary424 124 of 4 1.60Up
Testis145 64 of 4 0.60Down
Male accessory glands229 24 of 4 0.90None
Virgin spermatheca298 94 of 4 1.13None
Mated spermatheca337 124 of 4 1.27Up
Adult carcass132 154 of 4 0.50Down
Larval CNS318 204 of 4 1.20Up
Larval Salivary gland177 164 of 4 0.67Down
Larval midgut149 94 of 4 0.57Down
Larval tubule139 44 of 4 0.50Down
Larval hindgut131 74 of 4 0.50Down
Larval fat body160 104 of 4 0.60Down
Larval trachea250 344 of 4 0.95None
Larval carcass155 104 of 4 0.59Down
S2 cells (growing)239 54 of 4 0.90None
Whole fly264 114 of 4

Looking for FBgn0038471. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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