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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038474 through 18771 annotations produced 2 hits



mitochondrial ribosomal protein S11 (mRpS11):

Annotation Number : CG5184
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038474
Gbrowse : chr3R:12898452-12899531 (+) // 100.0 //
Probeset : 1628902_at
Accessions : protein= NP_524382;, nucleotide= NM_079658;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005763 // mitochondrial small ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0038474.
BDGP gene expression has embryonic in situ data for mRpS11: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0038474 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain274 74 of 4 1.50Up
Head150 84 of 4 0.80None
Eye105 84 of 4 0.59Down
Thoracicoabdominal ganglion226 74 of 4 1.30None
Salivary gland205 164 of 4 1.15None
Crop169 124 of 4 0.90None
Midgut167 94 of 4 0.90None
Tubule130 64 of 4 0.70Down
Hindgut228 74 of 4 1.30None
Heart138 64 of 4 0.77None
Fat body140 184 of 4 0.78None
Ovary272 74 of 4 1.50Up
Testis106 124 of 4 0.60Down
Male accessory glands191 74 of 4 1.10None
Virgin spermatheca91 114 of 4 0.51Down
Mated spermatheca116 34 of 4 0.65Down
Adult carcass175 224 of 4 1.00None
Larval CNS209 244 of 4 1.17None
Larval Salivary gland150 34 of 4 0.84None
Larval midgut137 104 of 4 0.77None
Larval tubule56 44 of 4 0.30Down
Larval hindgut247 234 of 4 1.38None
Larval fat body50 22 of 4 0.30Down
Larval trachea170 104 of 4 0.95None
Larval carcass185 164 of 4 1.04None
S2 cells (growing)173 24 of 4 0.97None
Whole fly179 174 of 4



mitochondrial ribosomal protein S11 (mRpS11):

Annotation Number : CG5184
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038474
Gbrowse : chr3R:12898452-12899531 (+) // 100.0 //
Probeset : 1625994_a_at
Accessions : protein= NP_524382;, nucleotide= NM_079658;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005763 // mitochondrial small ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0038474.
BDGP gene expression has embryonic in situ data for mRpS11: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0038474 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain300 84 of 4 1.50Up
Head200 54 of 4 1.00None
Eye154 44 of 4 0.75Down
Thoracicoabdominal ganglion313 94 of 4 1.50Up
Salivary gland228 64 of 4 1.11Up
Crop248 34 of 4 1.20Up
Midgut148 64 of 4 0.70Down
Tubule173 84 of 4 0.80Down
Hindgut284 134 of 4 1.40Up
Heart183 14 of 4 0.90Down
Fat body150 154 of 4 0.73Down
Ovary345 64 of 4 1.70Up
Testis105 34 of 4 0.50Down
Male accessory glands268 44 of 4 1.30Up
Virgin spermatheca132 114 of 4 0.65Down
Mated spermatheca164 24 of 4 0.80Down
Adult carcass186 74 of 4 0.90None
Larval CNS279 214 of 4 1.36Up
Larval Salivary gland161 114 of 4 0.79Down
Larval midgut153 104 of 4 0.75Down
Larval tubule76 34 of 4 0.40Down
Larval hindgut368 364 of 4 1.80Up
Larval fat body60 84 of 4 0.30Down
Larval trachea320 294 of 4 1.56Up
Larval carcass192 204 of 4 0.94None
S2 cells (growing)211 34 of 4 1.03None
Whole fly205 64 of 4

Looking for FBgn0038474. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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