FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038474 through 18771 annotations produced 2 hits

mitochondrial ribosomal protein S11 (mRpS11):

Annotation Number : CG5184
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038474
Gbrowse : chr3R:12898452-12899531 (+) // 100.0 //
Probeset : 1628902_at
Accessions : protein= NP_524382;, nucleotide= NM_079658;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005763 // mitochondrial small ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0038474.
BDGP gene expression has embryonic in situ data for mRpS11: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0038474 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	274 ± 7	4 of 4	1.50	Up
Head	150 ± 8	4 of 4	0.80	None
Eye	105 ± 8	4 of 4	0.59	Down
Thoracicoabdominal ganglion	226 ± 7	4 of 4	1.30	None
Salivary gland	205 ± 16	4 of 4	1.15	None
Crop	169 ± 12	4 of 4	0.90	None
Midgut	167 ± 9	4 of 4	0.90	None
Tubule	130 ± 6	4 of 4	0.70	Down
Hindgut	228 ± 7	4 of 4	1.30	None
Heart	138 ± 6	4 of 4	0.77	None
Fat body	140 ± 18	4 of 4	0.78	None
Ovary	272 ± 7	4 of 4	1.50	Up
Testis	106 ± 12	4 of 4	0.60	Down
Male accessory glands	191 ± 7	4 of 4	1.10	None
Virgin spermatheca	91 ± 11	4 of 4	0.51	Down
Mated spermatheca	116 ± 3	4 of 4	0.65	Down
Adult carcass	175 ± 22	4 of 4	1.00	None
Larval CNS	209 ± 24	4 of 4	1.17	None
Larval Salivary gland	150 ± 3	4 of 4	0.84	None
Larval midgut	137 ± 10	4 of 4	0.77	None
Larval tubule	56 ± 4	4 of 4	0.30	Down
Larval hindgut	247 ± 23	4 of 4	1.38	None
Larval fat body	50 ± 2	2 of 4	0.30	Down
Larval trachea	170 ± 10	4 of 4	0.95	None
Larval carcass	185 ± 16	4 of 4	1.04	None
S2 cells (growing)	173 ± 2	4 of 4	0.97	None
Whole fly	179 ± 17	4 of 4

mitochondrial ribosomal protein S11 (mRpS11):

Annotation Number : CG5184
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038474
Gbrowse : chr3R:12898452-12899531 (+) // 100.0 //
Probeset : 1625994_a_at
Accessions : protein= NP_524382;, nucleotide= NM_079658;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005763 // mitochondrial small ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0038474.
BDGP gene expression has embryonic in situ data for mRpS11: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0038474 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	300 ± 8	4 of 4	1.50	Up
Head	200 ± 5	4 of 4	1.00	None
Eye	154 ± 4	4 of 4	0.75	Down
Thoracicoabdominal ganglion	313 ± 9	4 of 4	1.50	Up
Salivary gland	228 ± 6	4 of 4	1.11	Up
Crop	248 ± 3	4 of 4	1.20	Up
Midgut	148 ± 6	4 of 4	0.70	Down
Tubule	173 ± 8	4 of 4	0.80	Down
Hindgut	284 ± 13	4 of 4	1.40	Up
Heart	183 ± 1	4 of 4	0.90	Down
Fat body	150 ± 15	4 of 4	0.73	Down
Ovary	345 ± 6	4 of 4	1.70	Up
Testis	105 ± 3	4 of 4	0.50	Down
Male accessory glands	268 ± 4	4 of 4	1.30	Up
Virgin spermatheca	132 ± 11	4 of 4	0.65	Down
Mated spermatheca	164 ± 2	4 of 4	0.80	Down
Adult carcass	186 ± 7	4 of 4	0.90	None
Larval CNS	279 ± 21	4 of 4	1.36	Up
Larval Salivary gland	161 ± 11	4 of 4	0.79	Down
Larval midgut	153 ± 10	4 of 4	0.75	Down
Larval tubule	76 ± 3	4 of 4	0.40	Down
Larval hindgut	368 ± 36	4 of 4	1.80	Up
Larval fat body	60 ± 8	4 of 4	0.30	Down
Larval trachea	320 ± 29	4 of 4	1.56	Up
Larval carcass	192 ± 20	4 of 4	0.94	None
S2 cells (growing)	211 ± 3	4 of 4	1.03	None
Whole fly	205 ± 6	4 of 4

Looking for FBgn0038474. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720