FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038475 through 18771 annotations produced 1 hits

Keap1 (Keap1):

Annotation Number : CG3962
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038475
Gbrowse : chr3R:12899650-12905665 (-) // 100.0 //
Probeset : 1633773_s_at
Accessions : protein= NP_650594; /// NP_732202; /// NP_788685;, nucleotide= NM_142337; /// NM_169744; /// NM_176508;
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0038475.
BDGP gene expression has embryonic in situ data for CG3962: 43 pix of staining in 12 body parts.
Homophila reports that CG3962 is a close match (3e-51) to human gene GAN;GAN1 (NP_071324), a gene associated with Giant axonal neuropathy-1, 256850 (3).
BioGrid reports that CG3962 interacts with CG4067 CG4206 CG5352 .
TRiP has 1 RNAi stocks for FBgn0038475 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038475 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	54 ± 0	4 of 4	1.30	Up
Head	50 ± 2	4 of 4	1.20	Up
Eye	37 ± 4	4 of 4	0.89	None
Thoracicoabdominal ganglion	39 ± 2	4 of 4	0.90	None
Salivary gland	42 ± 3	3 of 4	0.99	None
Crop	150 ± 3	4 of 4	3.50	Up
Midgut	148 ± 7	4 of 4	3.50	Up
Tubule	133 ± 5	4 of 4	3.10	Up
Hindgut	70 ± 3	4 of 4	1.70	Up
Heart	62 ± 2	4 of 4	1.48	Up
Fat body	89 ± 7	4 of 4	2.12	Up
Ovary	42 ± 1	4 of 4	1.00	None
Testis	10 ± 1	3 of 4	0.20	Down
Male accessory glands	17 ± 1	0 of 4	0.40	Down
Virgin spermatheca	36 ± 1	4 of 4	0.87	Down
Mated spermatheca	38 ± 2	4 of 4	0.90	None
Adult carcass	58 ± 4	4 of 4	1.40	Up
Larval CNS	50 ± 3	4 of 4	1.18	Up
Larval Salivary gland	28 ± 4	4 of 4	0.68	None
Larval midgut	67 ± 5	4 of 4	1.60	Up
Larval tubule	74 ± 3	4 of 4	1.70	Up
Larval hindgut	43 ± 2	4 of 4	1.03	None
Larval fat body	83 ± 8	4 of 4	2.00	Up
Larval trachea	29 ± 3	4 of 4	0.68	Down
Larval carcass	40 ± 5	4 of 4	0.94	None
S2 cells (growing)	36 ± 3	4 of 4	0.85	None
Whole fly	42 ± 1	4 of 4

Looking for FBgn0038475. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720