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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038478 through 18771 annotations produced 1 hits



chromosome alignment defect 1 (cal1):

Annotation Number : CG5148
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038478
Gbrowse : chr3R:12914012-12917663 (+) // 100.0 //
Probeset : 1629762_at
Accessions : protein= NP_650597;, nucleotide= NM_142340;
Pathway : 0000776 // kinetochore // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038478.
TRiP has 1 RNAi stocks for FBgn0038478 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038478 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain160 84 of 4 0.90Down
Head48 34 of 4 0.30Down
Eye38 34 of 4 0.21Down
Thoracicoabdominal ganglion142 94 of 4 0.80Down
Salivary gland95 44 of 4 0.53Down
Crop73 64 of 4 0.40Down
Midgut36 34 of 4 0.20Down
Tubule31 24 of 4 0.20Down
Hindgut50 24 of 4 0.30Down
Heart33 14 of 4 0.18Down
Fat body49 84 of 4 0.27Down
Ovary601 04 of 4 3.30Up
Testis118 54 of 4 0.70Down
Male accessory glands62 44 of 4 0.30Down
Virgin spermatheca59 64 of 4 0.33Down
Mated spermatheca64 54 of 4 0.36Down
Adult carcass43 24 of 4 0.20Down
Larval CNS324 464 of 4 1.78Up
Larval Salivary gland68 74 of 4 0.37Down
Larval midgut48 54 of 4 0.26Down
Larval tubule53 44 of 4 0.30Down
Larval hindgut80 54 of 4 0.44Down
Larval fat body50 44 of 4 0.30Down
Larval trachea61 24 of 4 0.34Down
Larval carcass65 24 of 4 0.36Down
S2 cells (growing)139 54 of 4 0.77Down
Whole fly181 104 of 4

Looking for FBgn0038478. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime