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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038481 through 18771 annotations produced 1 hits


(CG17475):

Annotation Number : CG17475
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038481
Gbrowse : chr3R:12955133-12956141 (-) // 99.6 //
Probeset : 1628608_at
Accessions : protein= NP_650600;, nucleotide= NM_142343;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0038481.
BDGP gene expression has embryonic in situ data for CG17475: 4 pix of staining in 1 body parts.
Homophila reports that CG17475 is a close match (3e-12) to human gene BSSP3;MRT1;PRSS12 (NP_003610), a gene associated with Mental retardation, autosomal recessive 1, 249500 (3).
BioGrid reports that CG17475 interacts with CG6608 .
VDRC has 3 RNAi stocks for FBgn0038481 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00Down
Head4 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.01Down
Crop1 ± 00 of 4 0.00Down
Midgut1372 ± 1014 of 4 5.50Up
Tubule75 ± 711 of 4 0.30Down
Hindgut3077 ± 1414 of 412.20Up
Heart1 ± 00 of 4 0.00Down
Fat body5 ± 20 of 4 0.02Down
Ovary2 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands4 ± 20 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.01Down
Mated spermatheca4 ± 10 of 4 0.02Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS1 ± 10 of 4 0.01Down
Larval Salivary gland4 ± 00 of 4 0.02Down
Larval midgut1526 ± 1454 of 4 6.06Up
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut554 ± 1724 of 4 2.20None
Larval fat body4 ± 10 of 4 0.00Down
Larval trachea2 ± 20 of 4 0.01Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly251 ± 374 of 4

Looking for FBgn0038481. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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