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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038482 through 18771 annotations produced 1 hits



(CG4053):

Annotation Number : CG4053
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038482
Gbrowse : chr3R:12957149-12957881 (-) // 100.0 //
Probeset : 1634834_at
Accessions : protein= NP_650601;, nucleotide= NM_142344;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0038482.
Homophila reports that CG4053 is a close match (2e-11) to human gene LPA (NP_005568), a gene associated with [LPA deficiency, congenital] (3);{Coronary artery disease, susceptibility to} (1).
VDRC has 3 RNAi stocks for FBgn0038482 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 10 of 4 0.00Down
Salivary gland7 ± 30 of 4 0.11Down
Crop3 ± 00 of 4 0.10Down
Midgut490 ± 464 of 4 7.50Up
Tubule5 ± 10 of 4 0.10Down
Hindgut84 ± 94 of 4 1.30None
Heart2 ± 00 of 4 0.04Down
Fat body5 ± 30 of 4 0.08Down
Ovary1 ± 01 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca4 ± 21 of 4 0.07Down
Mated spermatheca4 ± 10 of 4 0.07Down
Adult carcass7 ± 21 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.03Down
Larval Salivary gland4 ± 20 of 4 0.07Down
Larval midgut425 ± 104 of 4 6.53Up
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut3 ± 11 of 4 0.05Down
Larval fat body2 ± 00 of 4 0.00Down
Larval trachea1 ± 00 of 4 0.02Down
Larval carcass2 ± 10 of 4 0.03Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly65 ± 84 of 4

Looking for FBgn0038482. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime