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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038485 through 18771 annotations produced 1 hits



(CG5255):

Annotation Number : CG5255
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038485
Gbrowse : chr3R:12963632-12964513 (+) // 100.0 //
Probeset : 1635594_at
Accessions : protein= NP_650604;, nucleotide= NM_142347;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0038485.
Homophila reports that CG5255 is a close match (3e-11) to human gene MASP2 (NP_006601), a gene associated with MASP2 deficiency (3).
VDRC has 3 RNAi stocks for FBgn0038485 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.70None
Head3 00 of 4 1.90None
Eye0 00 of 4 0.38None
Thoracicoabdominal ganglion0 00 of 4 0.40None
Salivary gland5 10 of 4 2.65None
Crop3 00 of 4 1.60None
Midgut6 21 of 4 3.40None
Tubule2 00 of 4 1.40None
Hindgut5 11 of 4 2.70None
Heart2 00 of 4 1.43None
Fat body4 20 of 4 2.30None
Ovary1 00 of 4 0.90None
Testis4 11 of 4 2.40None
Male accessory glands4 10 of 4 2.10None
Virgin spermatheca2 00 of 4 1.20None
Mated spermatheca1 00 of 4 0.76None
Adult carcass8 00 of 4 4.30Up
Larval CNS1 10 of 4 0.99None
Larval Salivary gland1 00 of 4 0.61None
Larval midgut4 10 of 4 2.08None
Larval tubule2 10 of 4 1.40None
Larval hindgut1 00 of 4 0.73None
Larval fat body8 51 of 4 4.00None
Larval trachea8 32 of 4 4.08Up
Larval carcass2 10 of 4 1.20None
S2 cells (growing)4 10 of 4 2.24None
Whole fly2 11 of 4

Looking for FBgn0038485. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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