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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038486 through 18771 annotations produced 1 hits



(CG5265):

Annotation Number : CG5265
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038486
Gbrowse : chr3R:12964828-12966856 (+) // 100.0 //
Probeset : 1625527_at
Accessions : protein= NP_650605;, nucleotide= NM_142348;
Pathway : 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005777 // peroxisome //
Interpro : 0004092 // carnitine O-acetyltransferase activity // inferred from sequence or structural similarity /// 0004092 // carn
FlyMine data for FBgn0038486.
BDGP gene expression has embryonic in situ data for CG5265: 12 pix of staining in 7 body parts.
Homophila reports that CG5265 is a close match (9e-47) to human gene CPT2 (NP_000089), a gene associated with CPT deficiency, hepatic, type II, 600649 (3);CPT II deficiency, lethal neonatal, 608836 (3);Myopathy due to CPT II deficiency, 255110 (3).
VDRC has 2 RNAi stocks for FBgn0038486 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 03 of 4 0.10Down
Head9 ± 02 of 4 0.20Down
Eye4 ± 10 of 4 0.07Down
Thoracicoabdominal ganglion13 ± 11 of 4 0.20Down
Salivary gland27 ± 42 of 4 0.44Down
Crop6 ± 20 of 4 0.10Down
Midgut15 ± 11 of 4 0.30Down
Tubule3 ± 00 of 4 0.10Down
Hindgut10 ± 20 of 4 0.20Down
Heart4 ± 10 of 4 0.07Down
Fat body16 ± 50 of 4 0.26Down
Ovary3 ± 10 of 4 0.00Down
Testis658 ± 264 of 410.70Up
Male accessory glands12 ± 10 of 4 0.20Down
Virgin spermatheca10 ± 10 of 4 0.16Down
Mated spermatheca7 ± 20 of 4 0.12Down
Adult carcass15 ± 40 of 4 0.30Down
Larval CNS5 ± 20 of 4 0.09Down
Larval Salivary gland11 ± 21 of 4 0.19Down
Larval midgut10 ± 30 of 4 0.17Down
Larval tubule5 ± 00 of 4 0.10Down
Larval hindgut8 ± 20 of 4 0.13Down
Larval fat body64 ± 194 of 4 1.10None
Larval trachea5 ± 30 of 4 0.09Down
Larval carcass8 ± 10 of 4 0.14Down
S2 cells (growing)7 ± 10 of 4 0.12Down
Whole fly61 ± 34 of 4

Looking for FBgn0038486. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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