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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038490 through 18771 annotations produced 1 hits



(CG5285):

Annotation Number : CG5285
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038490
Gbrowse : chr3R:12976377-12977281 (+) // 100.0 //
Probeset : 1627348_at
Accessions : protein= NP_650609;, nucleotide= NM_142352;
Interpro : "0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity
FlyMine data for FBgn0038490.
VDRC has 2 RNAi stocks for FBgn0038490 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 ± 14 of 4 3.40Up
Head17 ± 11 of 4 1.10None
Eye22 ± 33 of 4 1.38None
Thoracicoabdominal ganglion40 ± 34 of 4 2.50Up
Salivary gland4 ± 00 of 4 0.24Down
Crop11 ± 20 of 4 0.70None
Midgut3 ± 10 of 4 0.20Down
Tubule3 ± 00 of 4 0.20Down
Hindgut7 ± 20 of 4 0.50None
Heart7 ± 10 of 4 0.43None
Fat body11 ± 60 of 4 0.70None
Ovary42 ± 14 of 4 2.60Up
Testis5 ± 10 of 4 0.30Down
Male accessory glands15 ± 20 of 4 1.00None
Virgin spermatheca9 ± 10 of 4 0.60None
Mated spermatheca16 ± 10 of 4 1.02None
Adult carcass8 ± 30 of 4 0.50None
Larval CNS43 ± 14 of 4 2.69Up
Larval Salivary gland8 ± 10 of 4 0.53None
Larval midgut2 ± 00 of 4 0.12Down
Larval tubule8 ± 10 of 4 0.50None
Larval hindgut6 ± 10 of 4 0.39None
Larval fat body8 ± 30 of 4 0.50None
Larval trachea15 ± 61 of 4 0.99None
Larval carcass4 ± 10 of 4 0.25Down
S2 cells (growing)54 ± 14 of 4 3.36Up
Whole fly16 ± 31 of 4

Looking for FBgn0038490. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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