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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038499 through 18771 annotations produced 1 hits



Brf (Brf):

Annotation Number : CG31256
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038499
Gbrowse : chr3R:13200554-13217054 (-) // 100.0 //
Probeset : 1626187_at
Accessions : protein= NP_001163636; /// NP_650616;, nucleotide= NM_001170165; /// NM_142359;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006359 // regulation of transcription from RNA polymerase III
Interpro : 0000126 // transcription factor TFIIIB complex // inferred from sequence or structural similarity /// 0005634 // nucleus
FlyMine data for FBgn0038499.
BDGP gene expression has embryonic in situ data for Brf: 13 pix of staining in 11 body parts.
BioGrid reports that CG31256 interacts with CG7562 .
TRiP has 2 RNAi stocks for FBgn0038499 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038499 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain95 34 of 4 2.00Up
Head61 34 of 4 1.30Up
Eye58 14 of 4 1.20None
Thoracicoabdominal ganglion99 64 of 4 2.10Up
Salivary gland57 52 of 4 1.19None
Crop90 34 of 4 1.90Up
Midgut51 34 of 4 1.10None
Tubule68 34 of 4 1.40Up
Hindgut52 24 of 4 1.10None
Heart36 24 of 4 0.76Down
Fat body42 64 of 4 0.88None
Ovary94 24 of 4 2.00Up
Testis8 12 of 4 0.20Down
Male accessory glands31 42 of 4 0.70Down
Virgin spermatheca47 14 of 4 0.99None
Mated spermatheca58 44 of 4 1.21None
Adult carcass50 44 of 4 1.00None
Larval CNS180 104 of 4 3.74Up
Larval Salivary gland45 11 of 4 0.93None
Larval midgut54 34 of 4 1.13None
Larval tubule94 74 of 4 2.00Up
Larval hindgut71 34 of 4 1.48Up
Larval fat body93 104 of 4 1.90Up
Larval trachea62 64 of 4 1.28Up
Larval carcass104 114 of 4 2.16Up
S2 cells (growing)160 34 of 4 3.33Up
Whole fly48 34 of 4

Looking for FBgn0038499. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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