FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038505 through 18771 annotations produced 1 hits

(CG17283):

Annotation Number : CG17283
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038505
Gbrowse : chr3R:13233603-13235001 (+) // 100.0 //
Probeset : 1623483_at
Accessions : protein= NP_650621;, nucleotide= NM_142364;
Interpro : 0004190 // aspartic-type endopeptidase activity // inferred from sequence or structural similarity /// 0004190 // aspart
FlyMine data for FBgn0038505.
Homophila reports that CG17283 is a close match (6e-42) to human gene REN (NP_000528), a gene associated with Renal tubular dysgenesis, 267430 (3);[Hyperproreninemia] (3).
VDRC has 2 RNAi stocks for FBgn0038505 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.80	None
Head	1 ± 0	0 of 4	1.30	None
Eye	1 ± 0	0 of 4	2.00	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.40	None
Salivary gland	2 ± 0	0 of 4	2.53	None
Crop	1 ± 1	0 of 4	2.00	None
Midgut	1 ± 0	0 of 4	1.40	None
Tubule	1 ± 0	0 of 4	1.50	None
Hindgut	0 ± 0	0 of 4	0.90	None
Heart	2 ± 1	0 of 4	3.29	None
Fat body	1 ± 0	0 of 4	1.29	None
Ovary	0 ± 0	0 of 4	0.60	None
Testis	0 ± 0	0 of 4	1.00	None
Male accessory glands	0 ± 0	0 of 4	0.90	None
Virgin spermatheca	0 ± 0	0 of 4	0.91	None
Mated spermatheca	1 ± 0	0 of 4	1.18	None
Adult carcass	1 ± 0	0 of 4	1.70	None
Larval CNS	0 ± 0	0 of 4	0.35	None
Larval Salivary gland	91 ± 24	4 of 4	107.71	Up
Larval midgut	1 ± 0	0 of 4	1.29	None
Larval tubule	4 ± 1	0 of 4	5.40	Up
Larval hindgut	1 ± 0	0 of 4	1.47	None
Larval fat body	1 ± 0	0 of 4	1.30	None
Larval trachea	0 ± 0	0 of 4	0.65	None
Larval carcass	1 ± 0	0 of 4	2.06	None
S2 cells (growing)	1 ± 0	0 of 4	1.26	None
Whole fly	0 ± 0	0 of 4

Looking for FBgn0038505. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720