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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038508 through 18771 annotations produced 1 hits



(CG5866):

Annotation Number : CG5866
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038508
Gbrowse : chr3R:13241467-13242088 (+) // 100.0 //
Probeset : 1639669_at
Accessions : protein= NP_650624;, nucleotide= NM_142367;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038508.
BioGrid reports that CG5866 interacts with CG8942 .
VDRC has 3 RNAi stocks for FBgn0038508 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head3 ± 10 of 4 1.20None
Eye1 ± 00 of 4 0.57None
Thoracicoabdominal ganglion1 ± 00 of 4 0.60None
Salivary gland8 ± 30 of 4 3.00None
Crop1 ± 00 of 4 0.50None
Midgut9 ± 20 of 4 3.20None
Tubule3 ± 00 of 4 1.30None
Hindgut6 ± 20 of 4 2.20None
Heart1 ± 00 of 4 0.52None
Fat body1 ± 00 of 4 0.56None
Ovary3 ± 10 of 4 1.20None
Testis3 ± 10 of 4 1.10None
Male accessory glands3 ± 10 of 4 1.30None
Virgin spermatheca2 ± 10 of 4 0.80None
Mated spermatheca1 ± 00 of 4 0.36None
Adult carcass2 ± 10 of 4 1.00None
Larval CNS4 ± 20 of 4 1.70None
Larval Salivary gland29 ± 74 of 410.50Up
Larval midgut2 ± 00 of 4 0.82None
Larval tubule2 ± 10 of 4 0.90None
Larval hindgut10 ± 13 of 4 3.75Up
Larval fat body2 ± 00 of 4 0.70None
Larval trachea8 ± 43 of 4 2.81None
Larval carcass18 ± 92 of 4 6.65None
S2 cells (growing)2 ± 11 of 4 0.98None
Whole fly2 ± 00 of 4

Looking for FBgn0038508. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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