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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038510 through 18771 annotations produced 1 hits


Annotation Number : CG14331
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038510
Gbrowse : chr3R:13264869-13266426 (-) // 100.0 //
Probeset : 1628499_at
Accessions : protein= NP_001097824; /// NP_650626;, nucleotide= NM_001104354; /// NM_142369;
FlyMine data for FBgn0038510.
VDRC has 2 RNAi stocks for FBgn0038510 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 24 of 4 8.00Up
Head9 20 of 4 2.90None
Eye0 00 of 4 0.25None
Thoracicoabdominal ganglion36 33 of 411.40Up
Salivary gland14 10 of 4 4.67Up
Crop4 20 of 4 1.40None
Midgut2 00 of 4 0.60None
Tubule4 00 of 4 1.30Up
Hindgut1 00 of 4 0.40None
Heart2 10 of 4 0.68None
Fat body2 00 of 4 0.74None
Ovary1 00 of 4 0.40None
Testis1 00 of 4 0.40None
Male accessory glands5 20 of 4 1.90None
Virgin spermatheca4 10 of 4 1.29None
Mated spermatheca1 00 of 4 0.52None
Adult carcass6 20 of 4 1.90None
Larval CNS23 22 of 4 7.47Up
Larval Salivary gland1 00 of 4 0.44None
Larval midgut2 00 of 4 0.83None
Larval tubule1 00 of 4 0.50None
Larval hindgut1 00 of 4 0.50None
Larval fat body1 00 of 4 0.40None
Larval trachea1 10 of 4 0.45None
Larval carcass3 00 of 4 1.06None
S2 cells (growing)2 10 of 4 0.88None
Whole fly3 10 of 4

Looking for FBgn0038510. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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