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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038516 through 18771 annotations produced 1 hits



Pyrroline-5-carboxylate reductase (CG5840):

Annotation Number : CG5840
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038516
Gbrowse : chr3R:13361408-13362858 (+) // 100.0 //
Probeset : 1631266_a_at
Accessions : protein= NP_650632; /// NP_732243;, nucleotide= NM_142375; /// NM_169762;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004735 // pyrroline-5-carboxylate reductase ac
FlyMine data for FBgn0038516.
BDGP gene expression has embryonic in situ data for CG5840: 20 pix of staining in 9 body parts.
BioGrid reports that CG5840 interacts with CG5840 CG7379 .
VDRC has 2 RNAi stocks for FBgn0038516 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 04 of 4 0.10Down
Head381 ± 344 of 4 3.60Up
Eye113 ± 154 of 4 1.07None
Thoracicoabdominal ganglion16 ± 04 of 4 0.20Down
Salivary gland16 ± 31 of 4 0.15Down
Crop10 ± 23 of 4 0.10Down
Midgut415 ± 124 of 4 3.90Up
Tubule650 ± 434 of 4 6.10Up
Hindgut69 ± 34 of 4 0.70Down
Heart236 ± 224 of 4 2.21Up
Fat body351 ± 484 of 4 3.29Up
Ovary7 ± 11 of 4 0.10Down
Testis7 ± 04 of 4 0.10Down
Male accessory glands7 ± 30 of 4 0.10Down
Virgin spermatheca938 ± 204 of 4 8.80Up
Mated spermatheca502 ± 554 of 4 4.71Up
Adult carcass242 ± 34 of 4 2.30Up
Larval CNS8 ± 23 of 4 0.08Down
Larval Salivary gland31 ± 54 of 4 0.29Down
Larval midgut248 ± 134 of 4 2.33Up
Larval tubule689 ± 234 of 4 6.50Up
Larval hindgut76 ± 24 of 4 0.71None
Larval fat body618 ± 1014 of 4 5.80Up
Larval trachea13 ± 54 of 4 0.13Down
Larval carcass12 ± 24 of 4 0.12Down
S2 cells (growing)37 ± 14 of 4 0.36Down
Whole fly106 ± 104 of 4

Looking for FBgn0038516. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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