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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038524 through 18771 annotations produced 1 hits



slalom (sll):

Annotation Number : CG7623
Flybase ID : FBgn0038524
Gbrowse : chr3R:13431823-13434266 (+) // 100.0 //
Probeset : 1636606_at
Accessions : protein= NP_524389;, nucleotide= NM_079665;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct
Interpro : 0005459 // UDP-galactose transmembrane transporter activity // inferred from sequence or structural similarity /// 00469
FlyMine data for FBgn0038524.
BioGrid reports that CG7623 interacts with CG4889 CG4637 CG4974 .
VDRC has 2 RNAi stocks for FBgn0038524 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain97 34 of 4 1.00None
Head98 64 of 4 1.00None
Eye74 34 of 4 0.76None
Thoracicoabdominal ganglion83 34 of 4 0.80None
Salivary gland994 524 of 410.06Up
Crop93 44 of 4 0.90None
Midgut85 34 of 4 0.90None
Tubule111 34 of 4 1.10Up
Hindgut91 14 of 4 0.90None
Heart100 34 of 4 1.01None
Fat body181 384 of 4 1.84Up
Ovary196 24 of 4 2.00Up
Testis90 54 of 4 0.90None
Male accessory glands141 34 of 4 1.40Up
Virgin spermatheca213 84 of 4 2.16Up
Mated spermatheca198 164 of 4 2.00Up
Adult carcass114 54 of 4 1.20None
Larval CNS103 74 of 4 1.05None
Larval Salivary gland456 314 of 4 4.62Up
Larval midgut49 33 of 4 0.50Down
Larval tubule74 34 of 4 0.80None
Larval hindgut63 24 of 4 0.64Down
Larval fat body104 44 of 4 1.10None
Larval trachea85 134 of 4 0.87None
Larval carcass63 14 of 4 0.64Down
S2 cells (growing)140 14 of 4 1.42Up
Whole fly98 104 of 4

Looking for FBgn0038524. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime