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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038525 through 18771 annotations produced 1 hits



(CG14329):

Annotation Number : CG14329
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038525
Gbrowse : chr3R:13435083-13436255 (+) // 100.0 //
Probeset : 1626024_at
Accessions : protein= NP_650636;, nucleotide= NM_142379;
FlyMine data for FBgn0038525.
BDGP gene expression has embryonic in situ data for CG14329: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0038525 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.60None
Head46 ± 44 of 4 7.20Up
Eye197 ± 364 of 430.64Up
Thoracicoabdominal ganglion6 ± 11 of 4 1.10None
Salivary gland9 ± 20 of 4 1.40None
Crop8 ± 12 of 4 1.30None
Midgut10 ± 00 of 4 1.60None
Tubule6 ± 00 of 4 0.90None
Hindgut8 ± 03 of 4 1.30None
Heart6 ± 11 of 4 0.97None
Fat body10 ± 42 of 4 1.64None
Ovary1 ± 00 of 4 0.30None
Testis3 ± 10 of 4 0.60None
Male accessory glands1 ± 00 of 4 0.30None
Virgin spermatheca10 ± 11 of 4 1.59None
Mated spermatheca10 ± 10 of 4 1.63None
Adult carcass16 ± 14 of 4 2.50Up
Larval CNS2 ± 10 of 4 0.43None
Larval Salivary gland8 ± 12 of 4 1.31None
Larval midgut7 ± 10 of 4 1.15None
Larval tubule6 ± 11 of 4 0.90None
Larval hindgut7 ± 12 of 4 1.10None
Larval fat body5 ± 10 of 4 0.80None
Larval trachea4 ± 31 of 4 0.67None
Larval carcass7 ± 21 of 4 1.14None
S2 cells (growing)4 ± 10 of 4 0.71None
Whole fly6 ± 32 of 4

Looking for FBgn0038525. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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