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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038529 through 18771 annotations produced 1 hits


Annotation Number : CG14323
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038529
Gbrowse : chr3R:13447189-13447822 (-) // 100.0 //
Probeset : 1632330_at
Accessions : protein= NP_732252;, nucleotide= NM_169767;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038529.
BioGrid reports that CG14323 interacts with CG3019 CG31211 CG4602 CG1435 CG15881 .
VDRC has 4 RNAi stocks for FBgn0038529 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 1.20None
Head1 00 of 4 0.80None
Eye1 10 of 4 1.07None
Thoracicoabdominal ganglion2 00 of 4 1.20None
Salivary gland6 30 of 4 3.45None
Crop5 00 of 4 3.20Up
Midgut12 20 of 4 6.90Up
Tubule2 00 of 4 1.20None
Hindgut4 10 of 4 2.50None
Heart1 10 of 4 0.96None
Fat body4 30 of 4 2.39None
Ovary1 00 of 4 0.60None
Testis1 00 of 4 0.70None
Male accessory glands2 10 of 4 1.40None
Virgin spermatheca2 10 of 4 1.12None
Mated spermatheca1 10 of 4 1.04None
Adult carcass8 50 of 4 4.80None
Larval CNS3 10 of 4 1.91None
Larval Salivary gland2 00 of 4 1.35None
Larval midgut8 10 of 4 4.35Up
Larval tubule0 00 of 4 0.40Down
Larval hindgut2 10 of 4 1.57None
Larval fat body2 10 of 4 1.30None
Larval trachea1 10 of 4 0.82None
Larval carcass2 10 of 4 1.18None
S2 cells (growing)3 10 of 4 1.68None
Whole fly1 00 of 4

Looking for FBgn0038529. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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