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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038530 through 18771 annotations produced 1 hits



attacin (AttD):

Annotation Number : CG7629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038530
Gbrowse : chr3R:13450989-13451810 (+) // 100.0 //
Probeset : 1631475_at
Accessions : protein= NP_524391;, nucleotide= NM_079667;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
FlyMine data for FBgn0038530.
VDRC has 3 RNAi stocks for FBgn0038530 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 02 of 4 0.10None
Head24 44 of 4 0.50None
Eye1 10 of 4 0.04None
Thoracicoabdominal ganglion1 00 of 4 0.00None
Salivary gland96 194 of 4 1.91None
Crop10 00 of 4 0.20None
Midgut165 204 of 4 3.30Up
Tubule27 191 of 4 0.50None
Hindgut198 734 of 4 3.90None
Heart106 184 of 4 2.11None
Fat body14 53 of 4 0.28None
Ovary3 01 of 4 0.10None
Testis3 00 of 4 0.10None
Male accessory glands7 00 of 4 0.10None
Virgin spermatheca9 22 of 4 0.19None
Mated spermatheca20 83 of 4 0.40None
Adult carcass30 123 of 4 0.60None
Larval CNS2 10 of 4 0.05None
Larval Salivary gland81 293 of 4 1.61None
Larval midgut195 444 of 4 3.87Up
Larval tubule136 964 of 4 2.70None
Larval hindgut547 504 of 410.87Up
Larval fat body11 61 of 4 0.20None
Larval trachea26 114 of 4 0.53None
Larval carcass24 84 of 4 0.48None
S2 cells (growing)3 01 of 4 0.07None
Whole fly50 284 of 4

Looking for FBgn0038530. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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