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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038533 through 18771 annotations produced 1 hits



(CG7523):

Annotation Number : CG7523
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038533
Gbrowse : chr3R:13494940-13496616 (-) // 100.0 //
Probeset : 1634982_at
Accessions : protein= NP_650643;, nucleotide= NM_142386;
FlyMine data for FBgn0038533.
VDRC has 1 RNAi stocks for FBgn0038533 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain121 ± 34 of 4 0.80Down
Head209 ± 44 of 4 1.30Up
Eye255 ± 104 of 4 1.60Up
Thoracicoabdominal ganglion122 ± 44 of 4 0.80Down
Salivary gland671 ± 514 of 4 4.21Up
Crop316 ± 214 of 4 2.00Up
Midgut403 ± 114 of 4 2.50Up
Tubule411 ± 154 of 4 2.60Up
Hindgut526 ± 164 of 4 3.30Up
Heart323 ± 134 of 4 2.03Up
Fat body263 ± 124 of 4 1.65Up
Ovary175 ± 44 of 4 1.10None
Testis132 ± 44 of 4 0.80None
Male accessory glands568 ± 214 of 4 3.60Up
Virgin spermatheca326 ± 174 of 4 2.05Up
Mated spermatheca287 ± 94 of 4 1.80Up
Adult carcass243 ± 94 of 4 1.50Up
Larval CNS195 ± 144 of 4 1.23Up
Larval Salivary gland342 ± 114 of 4 2.15Up
Larval midgut620 ± 164 of 4 3.89Up
Larval tubule993 ± 94 of 4 6.20Up
Larval hindgut459 ± 154 of 4 2.88Up
Larval fat body229 ± 224 of 4 1.40Up
Larval trachea451 ± 474 of 4 2.83Up
Larval carcass338 ± 344 of 4 2.12Up
S2 cells (growing)813 ± 94 of 4 5.10Up
Whole fly159 ± 94 of 4

Looking for FBgn0038533. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime