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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038535 through 18771 annotations produced 1 hits



CG18212 (alt):

Annotation Number : CG18212
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038535
Gbrowse : chr3R:13499902-13508234 (-) // 100.0 //
Probeset : 1636106_s_at
Accessions : protein= NP_650645; /// NP_732256; /// NP_732257; /// NP_732258; /// NP_732259; /// NP_996227;, nucleotide= NM_142388; /// NM_169768; /// NM_169769; /// NM_169770; /// NM_169771; /// NM_206505;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038535.
BDGP gene expression has embryonic in situ data for CG18212: 8 pix of staining in 3 body parts.
BioGrid reports that CG18212 interacts with CG4912 CG33141 CG33213 CG4832 CG5037 CG9331 .
VDRC has 2 RNAi stocks for FBgn0038535 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain158 44 of 4 0.50Down
Head147 134 of 4 0.50Down
Eye77 44 of 4 0.25Down
Thoracicoabdominal ganglion99 24 of 4 0.30Down
Salivary gland214 244 of 4 0.69Down
Crop144 114 of 4 0.50Down
Midgut369 344 of 4 1.20None
Tubule121 224 of 4 0.40Down
Hindgut113 34 of 4 0.40Down
Heart120 24 of 4 0.38Down
Fat body305 484 of 4 0.98None
Ovary597 144 of 4 1.90Up
Testis152 94 of 4 0.50Down
Male accessory glands632 654 of 4 2.00Up
Virgin spermatheca227 114 of 4 0.73Down
Mated spermatheca278 184 of 4 0.89None
Adult carcass103 164 of 4 0.30Down
Larval CNS328 644 of 4 1.05None
Larval Salivary gland387 444 of 4 1.24None
Larval midgut330 104 of 4 1.06None
Larval tubule476 344 of 4 1.50Up
Larval hindgut393 314 of 4 1.26None
Larval fat body317 334 of 4 1.00None
Larval trachea186 324 of 4 0.59Down
Larval carcass297 134 of 4 0.95None
S2 cells (growing)650 314 of 4 2.08Up
Whole fly312 134 of 4

Looking for FBgn0038535. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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