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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038539 through 18771 annotations produced 1 hits

Autophagy-specific gene 8b (Atg8b):

Annotation Number : CG12334
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038539
Gbrowse : chr3R:13550145-13550766 (-) // 100.0 //
Probeset : 1630629_at
Accessions : protein= NP_650649;, nucleotide= NM_142392;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038539.
BDGP gene expression has embryonic in situ data for CG12334: 8 pix of staining in 1 body parts.
BioGrid reports that CG12334 interacts with CG4428 .
TRiP has 2 RNAi stocks for FBgn0038539 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038539 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 02 of 4 0.00Down
Head7 02 of 4 0.00Down
Eye4 10 of 4 0.02Down
Thoracicoabdominal ganglion5 21 of 4 0.00Down
Salivary gland11 61 of 4 0.06Down
Crop8 11 of 4 0.00Down
Midgut9 10 of 4 0.00Down
Tubule6 10 of 4 0.00Down
Hindgut19 14 of 4 0.10Down
Heart4 00 of 4 0.02Down
Fat body10 30 of 4 0.06Down
Ovary3 00 of 4 0.00Down
Testis1776 784 of 4 9.80Up
Male accessory glands11 31 of 4 0.10Down
Virgin spermatheca7 21 of 4 0.04Down
Mated spermatheca7 01 of 4 0.04Down
Adult carcass12 32 of 4 0.10Down
Larval CNS4 12 of 4 0.03Down
Larval Salivary gland4 20 of 4 0.02Down
Larval midgut8 20 of 4 0.05Down
Larval tubule7 22 of 4 0.00Down
Larval hindgut9 14 of 4 0.05Down
Larval fat body197 914 of 4 1.10None
Larval trachea10 71 of 4 0.06Down
Larval carcass7 00 of 4 0.04Down
S2 cells (growing)4 01 of 4 0.02Down
Whole fly180 194 of 4

Looking for FBgn0038539. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime