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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038546 through 18771 annotations produced 1 hits



(CG7379):

Annotation Number : CG7379
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038546
Gbrowse : chr3R:13622087-13624047 (-) // 100.0 //
Probeset : 1638130_at
Accessions : protein= NP_650656;, nucleotide= NM_142399;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0038546.
BDGP gene expression has embryonic in situ data for CG7379: 29 pix of staining in 16 body parts.
Homophila reports that CG7379 is a close match (3e-25) to human gene ING1 (NP_937862), a gene associated with Squamous cell carcinoma, head and neck, 275355 (3).
BioGrid reports that CG7379 interacts with CG8609 CG8857 CG7911 CG8983 CG9066 CG9495 CG9781 .
VDRC has 3 RNAi stocks for FBgn0038546 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain264 ± 104 of 4 1.20None
Head167 ± 114 of 4 0.70Down
Eye159 ± 24 of 4 0.71Down
Thoracicoabdominal ganglion155 ± 44 of 4 0.70Down
Salivary gland229 ± 84 of 4 1.02None
Crop157 ± 34 of 4 0.70Down
Midgut131 ± 74 of 4 0.60Down
Tubule178 ± 44 of 4 0.80Down
Hindgut125 ± 14 of 4 0.60Down
Heart108 ± 54 of 4 0.48Down
Fat body98 ± 154 of 4 0.44Down
Ovary399 ± 54 of 4 1.80Up
Testis143 ± 34 of 4 0.60Down
Male accessory glands138 ± 74 of 4 0.60Down
Virgin spermatheca97 ± 64 of 4 0.44Down
Mated spermatheca93 ± 94 of 4 0.41Down
Adult carcass133 ± 94 of 4 0.60Down
Larval CNS230 ± 114 of 4 1.03None
Larval Salivary gland184 ± 94 of 4 0.82None
Larval midgut83 ± 54 of 4 0.37Down
Larval tubule108 ± 44 of 4 0.50Down
Larval hindgut98 ± 34 of 4 0.44Down
Larval fat body84 ± 34 of 4 0.40Down
Larval trachea165 ± 84 of 4 0.74Down
Larval carcass120 ± 84 of 4 0.54Down
S2 cells (growing)226 ± 84 of 4 1.01None
Whole fly224 ± 174 of 4

Looking for FBgn0038546. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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