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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038549 through 18771 annotations produced 1 hits



(CG17802):

Annotation Number : CG17802
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038549
Gbrowse : chr3R:13628952-13630970 (-) // 100.0 //
Probeset : 1624963_at
Accessions : protein= NP_650659;, nucleotide= NM_142402;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0038549.
Homophila reports that CG17802 is a close match (5e-11) to human gene WT1 (NP_077744), a gene associated with Denys-Drash syndrome, 194080 (3);Frasier syndrome, 136680 (3);Mesangial sclerosis, isolated diffuse, 256370 (3);WAGR syndrome, 194072 (3);Wilms tumor, type 1, 194070 (3).
BioGrid reports that CG17802 interacts with CG4148 CG5303 CG7085 CG8319 CG4617 CG7386 .
VDRC has 2 RNAi stocks for FBgn0038549 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 14 of 4 0.50Down
Head17 14 of 4 0.30Down
Eye10 23 of 4 0.20Down
Thoracicoabdominal ganglion24 24 of 4 0.40Down
Salivary gland15 30 of 4 0.28Down
Crop22 14 of 4 0.40Down
Midgut7 20 of 4 0.10Down
Tubule14 12 of 4 0.30Down
Hindgut11 12 of 4 0.20Down
Heart7 02 of 4 0.13Down
Fat body11 22 of 4 0.22Down
Ovary147 54 of 4 2.70Up
Testis15 14 of 4 0.30Down
Male accessory glands15 30 of 4 0.30Down
Virgin spermatheca12 13 of 4 0.23Down
Mated spermatheca12 14 of 4 0.22Down
Adult carcass13 10 of 4 0.20Down
Larval CNS25 44 of 4 0.46Down
Larval Salivary gland15 22 of 4 0.28Down
Larval midgut8 10 of 4 0.16Down
Larval tubule11 12 of 4 0.20Down
Larval hindgut10 13 of 4 0.20Down
Larval fat body14 22 of 4 0.30Down
Larval trachea16 14 of 4 0.30Down
Larval carcass11 22 of 4 0.21Down
S2 cells (growing)23 14 of 4 0.43Down
Whole fly54 34 of 4

Looking for FBgn0038549. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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