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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038550 through 18771 annotations produced 1 hits



(CG17801):

Annotation Number : CG17801
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038550
Gbrowse : chr3R:13631626-13632807 (-) // 100.0 //
Probeset : 1629831_at
Accessions : protein= NP_650660;, nucleotide= NM_142403;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0038550.
Homophila reports that CG17801 is a close match (2e-12) to human gene GFI1;ZNF163 (NP_005254), a gene associated with Neutropenia, nonimmune chronic idiopathic, of adults, 607847 (3);Neutropenia, severe congenital, 202700 (3).
BioGrid reports that CG17801 interacts with CG17855 CG4617 CG4730 CG7742 CG3052 CG3193 CG5692 CG8104 .
VDRC has 2 RNAi stocks for FBgn0038550 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20Down
Head2 10 of 4 0.20Down
Eye1 10 of 4 0.18Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland1 00 of 4 0.19Down
Crop1 00 of 4 0.20Down
Midgut3 10 of 4 0.40None
Tubule2 00 of 4 0.30Down
Hindgut2 10 of 4 0.30Down
Heart1 00 of 4 0.14Down
Fat body1 00 of 4 0.18Down
Ovary26 14 of 4 2.80Up
Testis5 10 of 4 0.60None
Male accessory glands2 10 of 4 0.30Down
Virgin spermatheca0 00 of 4 0.10Down
Mated spermatheca1 00 of 4 0.19Down
Adult carcass5 20 of 4 0.60None
Larval CNS0 00 of 4 0.09Down
Larval Salivary gland2 00 of 4 0.24Down
Larval midgut3 00 of 4 0.36Down
Larval tubule2 00 of 4 0.20Down
Larval hindgut3 00 of 4 0.31Down
Larval fat body4 10 of 4 0.40Down
Larval trachea1 10 of 4 0.16Down
Larval carcass0 00 of 4 0.10Down
S2 cells (growing)3 00 of 4 0.40Down
Whole fly9 11 of 4

Looking for FBgn0038550. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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