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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038551 through 18771 annotations produced 1 hits



(CG7357):

Annotation Number : CG7357
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038551
Gbrowse : chr3R:13633122-13634946 (-) // 99.7 //
Probeset : 1626568_at
Accessions : protein= NP_650661;, nucleotide= NM_142404;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0038551.
BDGP gene expression has embryonic in situ data for CG7357: 12 pix of staining in 7 body parts.
Homophila reports that CG7357 is a close match (2e-13) to human gene ZBTB16;ZNF145;PLZF (NP_005997), a gene associated with Leukemia, acute promyelocytic, PL2F/RARA type (3).
BioGrid reports that CG7357 interacts with CG8409 CG9253 CG9797 CG7809 CG8092 CG8146 CG8851 CG9277 CG9986 .
VDRC has 3 RNAi stocks for FBgn0038551 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain135 ± 14 of 4 0.90Down
Head84 ± 24 of 4 0.50Down
Eye83 ± 34 of 4 0.53Down
Thoracicoabdominal ganglion117 ± 64 of 4 0.70Down
Salivary gland96 ± 14 of 4 0.61Down
Crop84 ± 34 of 4 0.50Down
Midgut99 ± 14 of 4 0.60Down
Tubule61 ± 14 of 4 0.40Down
Hindgut71 ± 24 of 4 0.50Down
Heart62 ± 34 of 4 0.40Down
Fat body66 ± 64 of 4 0.42Down
Ovary338 ± 54 of 4 2.20Up
Testis105 ± 44 of 4 0.70Down
Male accessory glands104 ± 84 of 4 0.70Down
Virgin spermatheca111 ± 34 of 4 0.71Down
Mated spermatheca113 ± 94 of 4 0.72Down
Adult carcass62 ± 44 of 4 0.40Down
Larval CNS250 ± 64 of 4 1.59Up
Larval Salivary gland112 ± 64 of 4 0.71Down
Larval midgut65 ± 34 of 4 0.41Down
Larval tubule71 ± 24 of 4 0.50Down
Larval hindgut66 ± 34 of 4 0.42Down
Larval fat body77 ± 54 of 4 0.50Down
Larval trachea96 ± 104 of 4 0.61Down
Larval carcass46 ± 44 of 4 0.30Down
S2 cells (growing)151 ± 54 of 4 0.96None
Whole fly157 ± 54 of 4

Looking for FBgn0038551. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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