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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038564 through 18771 annotations produced 1 hits



(CG7785):

Annotation Number : CG7785
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038564
Gbrowse : chr3R:13847326-13849413 (+) // 100.0 //
Probeset : 1639731_at
Accessions : protein= NP_650673;, nucleotide= NM_142416;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038564.
BDGP gene expression has embryonic in situ data for CG7785: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0038564 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain239 ± 104 of 4 1.90Up
Head128 ± 164 of 4 1.00None
Eye154 ± 64 of 4 1.23None
Thoracicoabdominal ganglion328 ± 24 of 4 2.60Up
Salivary gland81 ± 74 of 4 0.65None
Crop53 ± 24 of 4 0.40Down
Midgut56 ± 34 of 4 0.40Down
Tubule70 ± 34 of 4 0.60Down
Hindgut98 ± 64 of 4 0.80None
Heart30 ± 24 of 4 0.24Down
Fat body29 ± 64 of 4 0.23Down
Ovary387 ± 74 of 4 3.10Up
Testis7 ± 04 of 4 0.10Down
Male accessory glands28 ± 44 of 4 0.20Down
Virgin spermatheca39 ± 64 of 4 0.31Down
Mated spermatheca38 ± 24 of 4 0.31Down
Adult carcass35 ± 14 of 4 0.30Down
Larval CNS187 ± 94 of 4 1.49Up
Larval Salivary gland37 ± 14 of 4 0.30Down
Larval midgut119 ± 74 of 4 0.95None
Larval tubule244 ± 124 of 4 1.90Up
Larval hindgut164 ± 114 of 4 1.31None
Larval fat body38 ± 44 of 4 0.30Down
Larval trachea93 ± 114 of 4 0.74None
Larval carcass61 ± 54 of 4 0.49Down
S2 cells (growing)82 ± 24 of 4 0.65None
Whole fly126 ± 164 of 4

Looking for FBgn0038564. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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