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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038565 through 18771 annotations produced 1 hits



(CG7794):

Annotation Number : CG7794
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038565
Gbrowse : chr3R:13849428-13851100 (+) // 100.0 //
Probeset : 1634964_at
Accessions : protein= NP_650674;, nucleotide= NM_142417;
Pathway : 0005874 // microtubule // inferred from sequence or structural similarity /// 0005874 // microtubule // inferred from el
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0038565.
BDGP gene expression has embryonic in situ data for CG7794: 8 pix of staining in 1 body parts.
Homophila reports that CG7794 is a close match (4e-140) to human gene LIS3;TUBA1A;TUBA3 (NP_006000), a gene associated with Lissencephaly 3, 611603 (3).
VDRC has 3 RNAi stocks for FBgn0038565 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.10Down
Head2 00 of 4 0.10Down
Eye2 10 of 4 0.05Down
Thoracicoabdominal ganglion3 00 of 4 0.10Down
Salivary gland1 00 of 4 0.03Down
Crop2 00 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule2 00 of 4 0.10Down
Hindgut3 10 of 4 0.10Down
Heart1 00 of 4 0.03Down
Fat body1 00 of 4 0.02Down
Ovary1 00 of 4 0.00Down
Testis774 404 of 415.70Up
Male accessory glands3 10 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.02Down
Mated spermatheca1 00 of 4 0.03Down
Adult carcass2 10 of 4 0.10Down
Larval CNS1 10 of 4 0.04Down
Larval Salivary gland0 00 of 4 0.02Down
Larval midgut1 00 of 4 0.03Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut1 00 of 4 0.04Down
Larval fat body61 303 of 4 1.20None
Larval trachea2 20 of 4 0.04Down
Larval carcass0 00 of 4 0.02Down
S2 cells (growing)57 24 of 4 1.16None
Whole fly49 24 of 4

Looking for FBgn0038565. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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