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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038566 through 18771 annotations produced 1 hits



(CG14317):

Annotation Number : CG14317
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038566
Gbrowse : chr3R:13906842-13908189 (+) // 100.0 //
Probeset : 1630571_at
Accessions : protein= NP_650675;, nucleotide= NM_142418;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038566.
BDGP gene expression has embryonic in situ data for CG14317: 79 pix of staining in 12 body parts.
BioGrid reports that CG14317 interacts with CG18292 CG7386 CG15529 CG15572 CG16983 CG1856 CG4079 CG5380 CG33484 CG9638 .
VDRC has 2 RNAi stocks for FBgn0038566 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.30None
Head7 ± 10 of 4 0.80None
Eye1 ± 00 of 4 0.16None
Thoracicoabdominal ganglion4 ± 20 of 4 0.50None
Salivary gland9 ± 10 of 4 1.05None
Crop4 ± 20 of 4 0.50None
Midgut8 ± 20 of 4 0.90None
Tubule4 ± 00 of 4 0.50Down
Hindgut6 ± 20 of 4 0.70None
Heart6 ± 10 of 4 0.75None
Fat body8 ± 40 of 4 0.92None
Ovary5 ± 20 of 4 0.60None
Testis1 ± 00 of 4 0.10None
Male accessory glands2 ± 00 of 4 0.20None
Virgin spermatheca1 ± 00 of 4 0.15None
Mated spermatheca2 ± 00 of 4 0.23None
Adult carcass15 ± 10 of 4 1.80None
Larval CNS2 ± 10 of 4 0.23None
Larval Salivary gland4 ± 00 of 4 0.46None
Larval midgut1 ± 00 of 4 0.20None
Larval tubule5 ± 10 of 4 0.60None
Larval hindgut9 ± 10 of 4 1.10None
Larval fat body7 ± 10 of 4 0.80None
Larval trachea1 ± 00 of 4 0.17None
Larval carcass2 ± 00 of 4 0.27None
S2 cells (growing)6 ± 20 of 4 0.76None
Whole fly8 ± 20 of 4

Looking for FBgn0038566. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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