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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038567 through 18771 annotations produced 1 hits



(CG14316):

Annotation Number : CG14316
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038567
Gbrowse : chr3R:13977841-13979364 (+) // 100.0 //
Probeset : 1634319_at
Accessions : protein= NP_650676;, nucleotide= NM_142419;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity //
FlyMine data for FBgn0038567.
VDRC has 1 RNAi stocks for FBgn0038567 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye1 00 of 4 0.04Down
Thoracicoabdominal ganglion2 10 of 4 0.10Down
Salivary gland1 00 of 4 0.04Down
Crop0 00 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart1 00 of 4 0.05Down
Fat body0 00 of 4 0.02Down
Ovary0 00 of 4 0.00Down
Testis663 194 of 417.00Up
Male accessory glands2 00 of 4 0.10Down
Virgin spermatheca0 00 of 4 0.02Down
Mated spermatheca1 10 of 4 0.04Down
Adult carcass1 00 of 4 0.00Down
Larval CNS0 10 of 4 0.02Down
Larval Salivary gland3 10 of 4 0.09Down
Larval midgut0 00 of 4 0.02Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.03Down
Larval fat body82 494 of 4 2.10None
Larval trachea1 10 of 4 0.04Down
Larval carcass1 10 of 4 0.04Down
S2 cells (growing)1 00 of 4 0.04Down
Whole fly39 44 of 4

Looking for FBgn0038567. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime