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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038568 through 18771 annotations produced 1 hits



(CG14315):

Annotation Number : CG14315
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038568
Gbrowse : chr3R:13984491-13985145 (+) // 100.0 //
Probeset : 1638096_at
Accessions : protein= NP_650677;, nucleotide= NM_142420;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038568.
BioGrid reports that CG14315 interacts with CG6683 .
VDRC has 3 RNAi stocks for FBgn0038568 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20Down
Head1 ± 00 of 4 0.20Down
Eye2 ± 00 of 4 0.33Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.60None
Salivary gland9 ± 20 of 4 1.23None
Crop2 ± 10 of 4 0.40Down
Midgut2 ± 00 of 4 0.30Down
Tubule3 ± 00 of 4 0.40Down
Hindgut5 ± 11 of 4 0.70None
Heart3 ± 00 of 4 0.41Down
Fat body4 ± 10 of 4 0.57Down
Ovary3 ± 00 of 4 0.40Down
Testis49 ± 74 of 4 6.70Up
Male accessory glands3 ± 10 of 4 0.50None
Virgin spermatheca1 ± 00 of 4 0.19Down
Mated spermatheca2 ± 10 of 4 0.33Down
Adult carcass4 ± 30 of 4 0.70None
Larval CNS2 ± 00 of 4 0.38Down
Larval Salivary gland1 ± 00 of 4 0.19Down
Larval midgut6 ± 20 of 4 0.84None
Larval tubule3 ± 10 of 4 0.50None
Larval hindgut4 ± 10 of 4 0.55None
Larval fat body11 ± 41 of 4 1.50None
Larval trachea1 ± 20 of 4 0.26Down
Larval carcass4 ± 00 of 4 0.57Down
S2 cells (growing)3 ± 00 of 4 0.45Down
Whole fly7 ± 02 of 4

Looking for FBgn0038568. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime