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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038571 through 18771 annotations produced 1 hits



/// peroxiredoxin 5 (CG7215 /// Prx5):

Annotation Number : CG32920
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038570 /// FBgn0038571
Gbrowse : chr3R:13991162-13992967 (-) // 100.0 //
Probeset : 1636638_s_at
Accessions : protein= NP_001027191; /// NP_001163644; /// NP_650679; /// NP_650680;, nucleotide= NM_001032020; /// NM_001170173; /// NM_142422; /// NM_142423;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005777
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016209 // antioxidant activity // inferred from se
FlyMine data for FBgn0038570 /// FBgn0038571.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1723 624 of 4 1.50Up
Head1568 574 of 4 1.30Up
Eye2009 654 of 4 1.71Up
Thoracicoabdominal ganglion1902 684 of 4 1.60Up
Salivary gland927 224 of 4 0.79Down
Crop1069 234 of 4 0.90None
Midgut713 164 of 4 0.60Down
Tubule1956 1264 of 4 1.70Up
Hindgut1591 264 of 4 1.40Up
Heart3114 1574 of 4 2.66Up
Fat body2539 844 of 4 2.17Up
Ovary641 204 of 4 0.50Down
Testis237 34 of 4 0.20Down
Male accessory glands839 224 of 4 0.70Down
Virgin spermatheca1152 394 of 4 0.98None
Mated spermatheca1100 534 of 4 0.94None
Adult carcass3034 234 of 4 2.60Up
Larval CNS781 164 of 4 0.67Down
Larval Salivary gland908 234 of 4 0.77Down
Larval midgut520 104 of 4 0.44Down
Larval tubule954 494 of 4 0.80Down
Larval hindgut1162 404 of 4 0.99None
Larval fat body597 464 of 4 0.50Down
Larval trachea827 604 of 4 0.71Down
Larval carcass1179 814 of 4 1.01None
S2 cells (growing)734 74 of 4 0.63Down
Whole fly1172 514 of 4

Looking for FBgn0038571. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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