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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038575 through 18771 annotations produced 1 hits


(CG7208):

Annotation Number : CG7208
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038575
Gbrowse : chr3R:14009377-14011437 (-) // 100.0 //
Probeset : 1627301_s_at
Accessions : protein= NP_650683; /// NP_732298;, nucleotide= NM_142426; /// NM_169791;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038575.
BioGrid reports that CG7208 interacts with CG8807 .
VDRC has 3 RNAi stocks for FBgn0038575 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.00Down
Head4 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion11 ± 11 of 4 0.00Down
Salivary gland4 ± 10 of 4 0.02Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule7 ± 30 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart2 ± 10 of 4 0.01Down
Fat body4 ± 20 of 4 0.02Down
Ovary646 ± 134 of 4 2.50Up
Testis586 ± 234 of 4 2.20Up
Male accessory glands6 ± 20 of 4 0.00Down
Virgin spermatheca6 ± 20 of 4 0.02Down
Mated spermatheca6 ± 20 of 4 0.03Down
Adult carcass9 ± 50 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut4 ± 10 of 4 0.02Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.00Down
Larval fat body78 ± 374 of 4 0.30Down
Larval trachea3 ± 40 of 4 0.01Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly262 ± 44 of 4

Looking for FBgn0038575. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime