Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038578 through 18771 annotations produced 1 hits



Mediator complex subunit 17 (MED17):

Annotation Number : CG7957
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038578
Gbrowse : chr3R:14014786-14016987 (+) // 100.0 //
Probeset : 1625217_at
Accessions : protein= NP_650686;, nucleotide= NM_142429;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0038578.
BDGP gene expression has embryonic in situ data for Trap80: 13 pix of staining in 20 body parts.
BioGrid reports that CG7957 interacts with CG9473 .
TRiP has 1 RNAi stocks for FBgn0038578 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038578 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 24 of 4 0.80Down
Head30 34 of 4 0.50Down
Eye36 54 of 4 0.66Down
Thoracicoabdominal ganglion45 24 of 4 0.80Down
Salivary gland42 23 of 4 0.77Down
Crop51 34 of 4 0.90None
Midgut42 13 of 4 0.80Down
Tubule38 04 of 4 0.70Down
Hindgut46 34 of 4 0.80None
Heart26 44 of 4 0.48Down
Fat body40 63 of 4 0.73Down
Ovary86 14 of 4 1.60Up
Testis37 14 of 4 0.70Down
Male accessory glands70 74 of 4 1.30None
Virgin spermatheca48 24 of 4 0.87None
Mated spermatheca46 24 of 4 0.83Down
Adult carcass40 53 of 4 0.70None
Larval CNS117 44 of 4 2.13Up
Larval Salivary gland76 84 of 4 1.39None
Larval midgut37 62 of 4 0.69None
Larval tubule75 24 of 4 1.40Up
Larval hindgut54 44 of 4 0.99None
Larval fat body46 54 of 4 0.80None
Larval trachea61 124 of 4 1.12None
Larval carcass59 54 of 4 1.08None
S2 cells (growing)92 34 of 4 1.67Up
Whole fly55 24 of 4

Looking for FBgn0038578. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime