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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038579 through 18771 annotations produced 1 hits


Annotation Number : CG14313
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038579
Gbrowse : chr3R:14017045-14017525 (-) // 100.0 //
Probeset : 1626939_at
Accessions : protein= NP_650687;, nucleotide= NM_142430;
FlyMine data for FBgn0038579.
BioGrid reports that CG14313 interacts with CG6576 .
TRiP has 1 RNAi stocks for FBgn0038579 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038579 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.70None
Head13 10 of 4 4.90Up
Eye4 10 of 4 1.79None
Thoracicoabdominal ganglion2 10 of 4 0.90None
Salivary gland3 10 of 4 1.17None
Crop4 10 of 4 1.70None
Midgut6 40 of 4 2.60None
Tubule2 00 of 4 1.00None
Hindgut1 00 of 4 0.40None
Heart2 10 of 4 1.01None
Fat body1 00 of 4 0.54None
Ovary1 00 of 4 0.40None
Testis2 00 of 4 0.90None
Male accessory glands6 20 of 4 2.30None
Virgin spermatheca2 10 of 4 1.09None
Mated spermatheca1 00 of 4 0.59None
Adult carcass5 30 of 4 1.90None
Larval CNS1 10 of 4 0.73None
Larval Salivary gland2 00 of 4 0.93None
Larval midgut1 00 of 4 0.71None
Larval tubule1 00 of 4 0.40None
Larval hindgut1 00 of 4 0.72None
Larval fat body5 10 of 4 2.10None
Larval trachea2 30 of 4 0.90None
Larval carcass2 00 of 4 1.07None
S2 cells (growing)0 00 of 4 0.32None
Whole fly2 10 of 4

Looking for FBgn0038579. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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